Atomistry » Zinc » PDB 4z0r-4zg9 » 4z6k
Atomistry »
  Zinc »
    PDB 4z0r-4zg9 »
      4z6k »

Zinc in PDB 4z6k: Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123

Enzymatic activity of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123

All present enzymatic activity of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123:
1.1.1.1;

Protein crystallography data

The structure of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123, PDB code: 4z6k was solved by Y.Papanikolau, V.Bouriotis, K.Petratos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 118.34 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 136.573, 136.573, 210.832, 90.00, 90.00, 120.00
R / Rfree (%) 21 / 23.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123 (pdb code 4z6k). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123, PDB code: 4z6k:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in 4z6k

Go back to Zinc Binding Sites List in 4z6k
Zinc binding site 1 out of 10 in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:53.5
occ:1.00
 NE2 A:HIS61 2.2 53.4 1.0
SG A:CYS38 2.3 60.6 1.0
SG A:CYS148 2.4 57.1 1.0
OE1 A:GLU62 2.6 58.7 1.0
CD2 A:HIS61 3.0 52.9 1.0
CB A:CYS38 3.1 54.6 1.0
CE1 A:HIS61 3.3 54.1 1.0
CB A:CYS148 3.3 52.1 1.0
NH1 A:ARG331 3.5 60.7 1.0
CD A:GLU62 3.7 58.0 1.0
CG A:GLU62 4.1 54.0 1.0
O A:HOH555 4.1 44.9 1.0
CG A:HIS61 4.2 50.4 1.0
ND1 A:HIS61 4.3 48.8 1.0
CA A:CYS38 4.3 61.7 1.0
N A:CYS38 4.4 58.5 1.0
CZ A:ARG331 4.5 61.5 1.0
CB A:THR40 4.6 51.8 1.0
OD1 A:ASP41 4.6 59.9 1.0
OE2 A:GLU62 4.7 52.9 1.0
CA A:CYS148 4.7 48.3 1.0
NH2 A:ARG331 4.9 62.9 1.0
O A:HOH695 5.0 50.5 1.0
OG1 A:THR40 5.0 55.8 1.0
C A:VAL37 5.0 56.1 1.0

Zinc binding site 2 out of 10 in 4z6k

Go back to Zinc Binding Sites List in 4z6k
Zinc binding site 2 out of 10 in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:43.0
occ:1.00
 SG A:CYS92 2.2 46.5 1.0
SG A:CYS98 2.3 42.8 1.0
SG A:CYS95 2.4 46.0 1.0
SG A:CYS106 2.4 44.7 1.0
CB A:CYS106 3.1 42.6 1.0
CB A:CYS95 3.3 48.7 1.0
CB A:CYS98 3.4 44.6 1.0
N A:CYS92 3.5 45.2 1.0
CB A:CYS92 3.5 46.5 1.0
N A:CYS95 3.9 50.8 1.0
N A:GLY93 3.9 49.6 1.0
CA A:CYS92 3.9 45.5 1.0
CA A:CYS106 4.1 43.9 1.0
O A:HOH583 4.1 38.2 1.0
N A:CYS98 4.2 43.5 1.0
CA A:CYS95 4.2 51.5 1.0
N A:HIS94 4.4 48.5 0.5
C A:CYS92 4.4 50.4 1.0
CA A:CYS98 4.4 45.1 1.0
N A:HIS94 4.4 48.6 0.5
O A:HOH544 4.4 63.7 1.0
C A:ALA91 4.6 45.4 1.0
CB A:ALA91 4.7 44.6 1.0
CA A:GLY93 4.8 46.0 1.0
OG A:SER108 4.9 53.2 1.0
C A:CYS95 4.9 48.1 1.0
C A:CYS106 4.9 44.7 1.0
O A:CYS95 4.9 47.0 1.0

Zinc binding site 3 out of 10 in 4z6k

Go back to Zinc Binding Sites List in 4z6k
Zinc binding site 3 out of 10 in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:54.7
occ:1.00
 SG B:CYS38 2.1 54.8 1.0
SG B:CYS148 2.3 54.2 1.0
NE2 B:HIS61 2.4 46.6 1.0
O B:HOH501 2.5 43.5 1.0
OE1 B:GLU62 2.7 67.4 1.0
CB B:CYS38 3.0 53.5 1.0
CD2 B:HIS61 3.1 49.2 1.0
CE1 B:HIS61 3.3 60.0 1.0
CB B:CYS148 3.3 58.0 1.0
NH1 B:ARG331 3.5 55.3 1.0
CD B:GLU62 3.7 58.5 1.0
O B:HOH530 4.1 38.2 1.0
CG B:GLU62 4.1 58.3 1.0
CA B:CYS38 4.1 60.0 1.0
N B:CYS38 4.2 56.2 1.0
CG B:HIS61 4.3 48.7 1.0
ND1 B:HIS61 4.3 53.0 1.0
OD1 B:ASP41 4.6 48.9 1.0
CZ B:ARG331 4.6 56.8 1.0
CB B:THR40 4.6 47.0 1.0
OE2 B:GLU62 4.8 58.6 1.0
CA B:CYS148 4.8 50.6 1.0
C B:VAL37 4.8 56.3 1.0
C B:CYS38 4.9 56.7 1.0
NH2 B:ARG331 4.9 57.4 1.0
OG1 B:THR40 5.0 50.9 1.0

Zinc binding site 4 out of 10 in 4z6k

Go back to Zinc Binding Sites List in 4z6k
Zinc binding site 4 out of 10 in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:41.2
occ:1.00
 SG B:CYS95 2.3 46.1 1.0
SG B:CYS106 2.4 41.5 1.0
SG B:CYS98 2.4 45.5 1.0
SG B:CYS92 2.4 44.9 1.0
CB B:CYS106 3.0 37.1 1.0
CB B:CYS95 3.3 44.7 1.0
CB B:CYS92 3.4 43.9 1.0
CB B:CYS98 3.5 46.0 1.0
N B:CYS92 3.6 43.6 1.0
N B:GLY93 3.9 44.8 1.0
N B:CYS95 3.9 47.0 1.0
CA B:CYS92 3.9 43.5 1.0
CA B:CYS106 4.0 38.8 1.0
O B:HOH601 4.1 40.9 1.0
N B:CYS98 4.2 41.9 1.0
O B:HOH594 4.2 50.7 1.0
CA B:CYS95 4.3 46.2 1.0
C B:CYS92 4.3 45.5 1.0
CA B:CYS98 4.4 43.3 1.0
N B:HIS94 4.5 47.1 1.0
C B:ALA91 4.6 46.9 1.0
CA B:GLY93 4.7 45.5 1.0
CB B:ALA91 4.7 43.4 1.0
C B:CYS106 4.9 43.9 1.0
OG B:SER108 4.9 51.9 1.0
C B:CYS95 4.9 45.4 1.0
O B:CYS95 5.0 50.1 1.0
N B:GLU107 5.0 43.0 1.0

Zinc binding site 5 out of 10 in 4z6k

Go back to Zinc Binding Sites List in 4z6k
Zinc binding site 5 out of 10 in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn403

b:50.4
occ:1.00
 OE2 B:GLU16 1.8 44.3 1.0
NE2 B:HIS7 2.0 48.3 1.0
CD B:GLU16 2.6 47.5 1.0
CE1 B:HIS7 2.7 54.2 1.0
OE1 B:GLU16 2.7 46.5 1.0
CD2 B:HIS7 3.2 56.1 1.0
O B:HOH549 3.9 40.7 1.0
ND1 B:HIS7 4.0 51.6 1.0
CG B:GLU16 4.1 48.3 1.0
CG1 B:VAL5 4.1 51.9 1.0
CG B:HIS7 4.2 55.9 1.0
CB B:VAL5 4.4 47.3 1.0
CG2 B:VAL5 4.7 46.8 1.0
OE1 B:GLN14 4.9 56.8 1.0

Zinc binding site 6 out of 10 in 4z6k

Go back to Zinc Binding Sites List in 4z6k
Zinc binding site 6 out of 10 in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn401

b:56.2
occ:1.00
 NE2 C:HIS61 2.2 55.5 1.0
SG C:CYS38 2.2 59.1 1.0
SG C:CYS148 2.4 65.5 1.0
OE1 C:GLU62 2.7 56.3 1.0
CD2 C:HIS61 3.0 48.9 1.0
CB C:CYS38 3.2 61.0 1.0
CE1 C:HIS61 3.2 61.6 1.0
CB C:CYS148 3.3 61.6 1.0
NH1 C:ARG331 3.5 69.4 1.0
CD C:GLU62 3.7 64.8 1.0
CG C:GLU62 4.1 62.6 1.0
O C:HOH504 4.1 47.1 1.0
CG C:HIS61 4.2 50.4 1.0
ND1 C:HIS61 4.3 55.4 1.0
O C:HOH693 4.3 56.8 1.0
CA C:CYS38 4.3 61.8 1.0
N C:CYS38 4.5 64.0 1.0
CZ C:ARG331 4.6 70.2 1.0
CB C:THR40 4.6 56.1 1.0
OD1 C:ASP41 4.6 59.1 1.0
CA C:CYS148 4.7 53.2 1.0
OE2 C:GLU62 4.8 62.9 1.0
NH2 C:ARG331 4.9 70.6 1.0
O C:HOH676 5.0 53.4 1.0
OG1 C:THR40 5.0 56.2 1.0

Zinc binding site 7 out of 10 in 4z6k

Go back to Zinc Binding Sites List in 4z6k
Zinc binding site 7 out of 10 in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn402

b:44.2
occ:1.00
 SG C:CYS92 2.2 47.5 1.0
SG C:CYS98 2.3 46.5 1.0
SG C:CYS106 2.3 48.6 1.0
SG C:CYS95 2.4 43.2 1.0
CB C:CYS106 3.1 45.2 1.0
CB C:CYS95 3.4 50.1 1.0
CB C:CYS92 3.4 45.3 1.0
CB C:CYS98 3.5 48.0 1.0
N C:CYS92 3.5 50.0 1.0
N C:GLY93 3.9 45.6 1.0
CA C:CYS92 3.9 48.4 1.0
N C:CYS95 3.9 49.4 1.0
CA C:CYS106 4.0 46.5 1.0
O C:HOH626 4.0 41.2 1.0
O C:HOH529 4.1 59.6 1.0
N C:CYS98 4.2 45.5 1.0
CA C:CYS95 4.3 49.2 1.0
C C:CYS92 4.4 48.6 1.0
N C:HIS94 4.4 50.4 1.0
CA C:CYS98 4.4 45.2 1.0
C C:ALA91 4.6 46.3 1.0
CB C:ALA91 4.7 43.5 1.0
C C:CYS106 4.8 48.6 1.0
CA C:GLY93 4.8 46.8 1.0
OG C:SER108 4.8 56.7 1.0
N C:GLU107 4.9 48.3 1.0
C C:CYS95 4.9 47.9 1.0
O C:CYS95 5.0 47.2 1.0

Zinc binding site 8 out of 10 in 4z6k

Go back to Zinc Binding Sites List in 4z6k
Zinc binding site 8 out of 10 in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn401

b:57.8
occ:1.00
 SG D:CYS38 2.2 65.4 1.0
SG D:CYS148 2.3 66.5 1.0
NE2 D:HIS61 2.4 60.4 1.0
OE1 D:GLU62 2.6 70.6 1.0
CB D:CYS38 3.0 58.4 1.0
CD2 D:HIS61 3.1 50.0 1.0
CB D:CYS148 3.2 66.0 1.0
CE1 D:HIS61 3.3 55.7 1.0
NH1 D:ARG331 3.5 57.4 1.0
CD D:GLU62 3.6 67.0 1.0
CG D:GLU62 4.1 54.9 1.0
O D:HOH512 4.1 43.7 1.0
O D:HOH681 4.2 57.9 1.0
CA D:CYS38 4.2 63.5 1.0
CG D:HIS61 4.3 49.6 1.0
N D:CYS38 4.3 59.4 1.0
ND1 D:HIS61 4.3 58.2 1.0
CZ D:ARG331 4.6 68.7 1.0
OD1 D:ASP41 4.6 58.7 1.0
CB D:THR40 4.7 53.1 1.0
OE2 D:GLU62 4.7 52.8 1.0
CA D:CYS148 4.7 50.6 1.0
C D:VAL37 4.9 61.3 1.0
NH2 D:ARG331 4.9 64.0 1.0
C D:CYS38 5.0 61.6 1.0
OG1 D:THR40 5.0 54.8 1.0

Zinc binding site 9 out of 10 in 4z6k

Go back to Zinc Binding Sites List in 4z6k
Zinc binding site 9 out of 10 in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn402

b:40.1
occ:1.00
 SG D:CYS95 2.3 47.8 1.0
SG D:CYS98 2.4 43.8 1.0
SG D:CYS106 2.4 41.7 1.0
SG D:CYS92 2.4 45.5 1.0
CB D:CYS106 3.0 38.6 1.0
CB D:CYS95 3.4 42.9 1.0
CB D:CYS98 3.5 40.9 1.0
CB D:CYS92 3.5 39.7 1.0
N D:CYS92 3.5 40.9 1.0
N D:GLY93 3.8 41.3 1.0
CA D:CYS92 3.9 44.8 1.0
N D:CYS95 4.0 46.0 1.0
CA D:CYS106 4.0 43.4 1.0
O D:HOH603 4.0 37.3 1.0
O D:HOH558 4.2 57.0 1.0
N D:CYS98 4.2 41.4 1.0
CA D:CYS95 4.3 42.5 1.0
C D:CYS92 4.3 44.2 1.0
N D:HIS94 4.4 47.1 0.5
CA D:CYS98 4.4 41.7 1.0
N D:HIS94 4.4 45.6 0.5
C D:ALA91 4.6 45.9 1.0
CB D:ALA91 4.7 46.6 1.0
CA D:GLY93 4.7 43.5 1.0
C D:CYS106 4.9 45.5 1.0
OG D:SER108 4.9 46.9 1.0
C D:CYS95 5.0 42.2 1.0
O D:CYS95 5.0 39.5 1.0
N D:GLU107 5.0 43.6 1.0
C D:GLY93 5.0 45.6 1.0

Zinc binding site 10 out of 10 in 4z6k

Go back to Zinc Binding Sites List in 4z6k
Zinc binding site 10 out of 10 in the Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. Tae 123 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn403

b:59.2
occ:1.00
 NE2 D:HIS7 1.8 60.5 1.0
OE2 D:GLU16 1.9 53.4 1.0
CE1 D:HIS7 2.6 67.9 1.0
CD D:GLU16 2.6 62.9 1.0
OE1 D:GLU16 2.8 68.0 1.0
CD2 D:HIS7 3.0 65.6 1.0
O D:HOH521 3.7 47.0 1.0
ND1 D:HIS7 3.8 64.7 1.0
CG D:HIS7 4.0 67.9 1.0
CG1 D:VAL5 4.1 58.8 1.0
CG D:GLU16 4.2 62.2 1.0
CB D:VAL5 4.5 58.2 1.0
CG2 D:VAL5 4.9 56.5 1.0
OE1 D:GLN14 5.0 63.4 1.0

Reference:

Y.Papanikolau, I.Tsigos, M.Papadovasilaki, V.Bouriotis, K.Petratos. Structure of Alcohol Dehydrogenase From the Antarctic Psychrophile Moraxella Sp. TAE123 To Be Published.
Page generated: Wed Dec 16 05:58:54 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy