Zinc in PDB 4z4m: Crystal Structure of Gfp-TAX1BP1 UBZ2 Domain Fusion Protein

The structure of Crystal Structure of Gfp-TAX1BP1 UBZ2 Domain Fusion Protein, PDB code: 4z4m was solved by A.Rohaim, M.Kawasaki, S.Wakatsuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	63.87 / 2.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	67.731, 88.773, 91.949, 90.00, 90.00, 90.00
R / Rfree (%)	23.4 / 29.8

The binding sites of Zinc atom in the Crystal Structure of Gfp-TAX1BP1 UBZ2 Domain Fusion Protein (pdb code 4z4m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Gfp-TAX1BP1 UBZ2 Domain Fusion Protein, PDB code: 4z4m:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Gfp-TAX1BP1 UBZ2 Domain Fusion Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Gfp-TAX1BP1 UBZ2 Domain Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:26.1 occ:1.00 NE2 A:HIS260 1.9 22.9 1.0 NE2 A:HIS256 2.1 28.0 1.0 SG A:CYS240 2.2 31.6 1.0 SG A:CYS237 2.4 29.8 1.0 CE1 A:HIS256 2.9 30.6 1.0 CE1 A:HIS260 2.9 27.9 1.0 CD2 A:HIS260 3.0 27.6 1.0 CD2 A:HIS256 3.1 23.9 1.0 CB A:CYS237 3.1 27.7 1.0 CB A:CYS240 3.2 32.3 1.0 N A:CYS240 3.7 29.6 1.0 ND1 A:HIS260 4.0 27.5 1.0 ND1 A:HIS256 4.0 27.3 1.0 CA A:CYS240 4.1 31.3 1.0 CG A:HIS260 4.1 29.9 1.0 CG A:HIS256 4.2 27.5 1.0 CB A:MET239 4.5 30.6 1.0 CA A:CYS237 4.6 28.2 1.0 CB A:GLU242 4.7 34.2 1.0 C A:CYS240 4.7 32.8 1.0 C A:MET239 4.8 30.2 1.0 O A:HIS256 4.8 25.8 1.0 N A:GLU242 4.9 33.1 1.0 CA A:MET239 4.9 29.2 1.0 N A:SER241 5.0 32.6 1.0 OE2 A:GLU242 5.0 39.5 1.0 N A:MET239 5.0 28.1 1.0 C A:CYS237 5.0 28.2 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Gfp-TAX1BP1 UBZ2 Domain Fusion Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Gfp-TAX1BP1 UBZ2 Domain Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:23.8 occ:1.00 NE2 B:HIS256 2.0 24.0 1.0 NE2 B:HIS260 2.0 27.6 1.0 SG B:CYS240 2.2 24.8 1.0 SG B:CYS237 2.3 27.7 1.0 CE1 B:HIS256 2.8 26.8 1.0 CE1 B:HIS260 2.9 31.5 1.0 CD2 B:HIS260 3.0 31.2 1.0 CD2 B:HIS256 3.1 21.8 1.0 CB B:CYS237 3.2 28.0 1.0 CB B:CYS240 3.4 30.8 1.0 N B:CYS240 3.8 29.3 1.0 ND1 B:HIS256 3.9 25.4 1.0 ND1 B:HIS260 4.0 32.9 1.0 CG B:HIS256 4.1 25.6 1.0 CG B:HIS260 4.1 32.3 1.0 CA B:CYS240 4.2 29.3 1.0 CB B:MET239 4.4 29.4 1.0 CB B:GLU242 4.5 29.6 1.0 CA B:CYS237 4.6 27.6 1.0 O B:HIS256 4.7 27.5 1.0 C B:MET239 4.8 30.1 1.0 C B:CYS240 4.8 30.3 1.0 OE2 B:GLU242 4.9 27.7 1.0 CA B:MET239 5.0 29.6 1.0 N B:GLU242 5.0 29.2 1.0

N.Suzuki, A.Rohaim, R.Kato, I.Dikic, S.Wakatsuki, M.Kawasaki. A Novel Mode of Ubiquitin Recognition By the Ubiquitin-Binding Zinc Finger Domain of WRNIP1. Febs J. V. 283 2004 2016.
ISSN: ISSN 1742-464X
PubMed: 27062441
DOI: 10.1111/FEBS.13734