Zinc in PDB 4z04: Crystal Structure of A Probable Lactoylglutathione Lyase From Brucella Melitensis in Complex with Glutathione

Protein crystallography data

The structure of Crystal Structure of A Probable Lactoylglutathione Lyase From Brucella Melitensis in Complex with Glutathione, PDB code: 4z04 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.62 / 1.45
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 82.630, 39.500, 41.700, 90.00, 116.29, 90.00
R / Rfree (%) 13.4 / 16.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Probable Lactoylglutathione Lyase From Brucella Melitensis in Complex with Glutathione (pdb code 4z04). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Probable Lactoylglutathione Lyase From Brucella Melitensis in Complex with Glutathione, PDB code: 4z04:

Zinc binding site 1 out of 1 in 4z04

Go back to Zinc Binding Sites List in 4z04
Zinc binding site 1 out of 1 in the Crystal Structure of A Probable Lactoylglutathione Lyase From Brucella Melitensis in Complex with Glutathione


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Probable Lactoylglutathione Lyase From Brucella Melitensis in Complex with Glutathione within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:13.4
occ:0.89
OE2 A:GLU116 2.0 14.4 1.0
NE2 A:HIS63 2.0 14.2 1.0
SG2 A:GSH200 2.2 15.2 1.0
CE1 A:HIS63 2.9 14.5 1.0
CD A:GLU116 3.1 15.2 1.0
CD2 A:HIS63 3.1 14.9 1.0
CB2 A:GSH200 3.2 15.2 1.0
OH A:TYR102 3.5 14.3 1.0
OE1 A:GLU116 3.5 14.7 1.0
CA2 A:GSH200 3.8 14.8 1.0
CB A:ALA65 4.1 15.4 1.0
ND1 A:HIS63 4.1 14.8 1.0
CE1 A:PHE106 4.2 14.1 1.0
CG A:HIS63 4.2 14.2 1.0
CG A:GLU116 4.3 13.4 1.0
CB A:GLU116 4.5 13.2 1.0
N2 A:GSH200 4.6 13.9 1.0
CZ A:PHE106 4.7 15.0 1.0
CZ A:TYR102 4.8 13.3 1.0

Reference:

J.Abendroth, M.C.Clifton, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Probable Lactoylglutathione Lyase From Brucella Melitensis in Complex with Glutathione To Be Published.
Page generated: Wed Dec 16 05:58:35 2020

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