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Zinc in PDB 4ypt: X-Ray Structural of Three Tandemly Linked Domains of NSP3 From Murine Hepatitis Virus at 2.60 Angstroms Resolution

Enzymatic activity of X-Ray Structural of Three Tandemly Linked Domains of NSP3 From Murine Hepatitis Virus at 2.60 Angstroms Resolution

All present enzymatic activity of X-Ray Structural of Three Tandemly Linked Domains of NSP3 From Murine Hepatitis Virus at 2.60 Angstroms Resolution:
2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13;

Protein crystallography data

The structure of X-Ray Structural of Three Tandemly Linked Domains of NSP3 From Murine Hepatitis Virus at 2.60 Angstroms Resolution, PDB code: 4ypt was solved by Y.Chen, S.N.Savinov, A.M.Mielech, T.Cao, S.C.Baker, A.D.Mesecar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.20 / 2.60
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 155.576, 155.576, 155.576, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 22.2

Zinc Binding Sites:

The binding sites of Zinc atom in the X-Ray Structural of Three Tandemly Linked Domains of NSP3 From Murine Hepatitis Virus at 2.60 Angstroms Resolution (pdb code 4ypt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the X-Ray Structural of Three Tandemly Linked Domains of NSP3 From Murine Hepatitis Virus at 2.60 Angstroms Resolution, PDB code: 4ypt:

Zinc binding site 1 out of 1 in 4ypt

Go back to Zinc Binding Sites List in 4ypt
Zinc binding site 1 out of 1 in the X-Ray Structural of Three Tandemly Linked Domains of NSP3 From Murine Hepatitis Virus at 2.60 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Structural of Three Tandemly Linked Domains of NSP3 From Murine Hepatitis Virus at 2.60 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2001

b:79.6
occ:1.00
 SG A:CYS1830 2.3 69.7 1.0
SG A:CYS1796 2.3 75.6 1.0
SG A:CYS1828 2.3 0.6 1.0
SG A:CYS1794 2.4 62.9 1.0
CB A:CYS1830 3.1 81.2 1.0
CB A:CYS1796 3.5 57.0 1.0
CB A:CYS1794 3.5 56.4 1.0
CB A:CYS1828 3.5 83.2 1.0
N A:CYS1830 3.6 81.5 1.0
N A:CYS1796 3.7 64.0 1.0
CA A:CYS1830 4.0 77.7 1.0
N A:LYS1795 4.2 65.9 1.0
CG A:LYS1833 4.2 74.3 1.0
CA A:CYS1796 4.2 65.0 1.0
N A:THR1829 4.5 88.7 1.0
C A:CYS1794 4.7 62.9 1.0
C A:LYS1795 4.7 66.2 1.0
CA A:CYS1794 4.8 59.6 1.0
CA A:CYS1828 4.8 84.1 1.0
C A:THR1829 4.8 87.0 1.0
C A:CYS1828 4.8 84.1 1.0
C A:CYS1830 4.8 68.1 1.0
CD A:LYS1833 4.8 81.0 1.0
CA A:LYS1795 4.9 67.2 1.0
CB A:LYS1795 5.0 65.3 1.0

Reference:

Y.Chen, S.N.Savinov, A.M.Mielech, T.Cao, S.C.Baker, A.D.Mesecar. X-Ray Structural and Functional Studies of the Three Tandemly Linked Domains of Non-Structural Protein 3 (NSP3) From Murine Hepatitis Virus Reveal Conserved Functions. J.Biol.Chem. V. 290 25293 2015.
ISSN: ESSN 1083-351X
PubMed: 26296883
DOI: 10.1074/JBC.M115.662130
Page generated: Sun Oct 27 11:22:43 2024

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