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Zinc in PDB 4whb: Crystal Structure of Phenylurea Hydrolase B

Protein crystallography data

The structure of Crystal Structure of Phenylurea Hydrolase B, PDB code: 4whb was solved by E.Sugrue, P.D.Carr, J.L.Khurana, C.J.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.60 / 2.96
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 77.374, 100.526, 238.551, 90.00, 98.37, 90.00
R / Rfree (%) 25.2 / 30.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Phenylurea Hydrolase B (pdb code 4whb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Phenylurea Hydrolase B, PDB code: 4whb:

Zinc binding site 1 out of 1 in 4whb

Go back to Zinc Binding Sites List in 4whb
Zinc binding site 1 out of 1 in the Crystal Structure of Phenylurea Hydrolase B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Phenylurea Hydrolase B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:72.3
occ:1.00
OD2 A:ASP344 1.9 23.7 1.0
O A:HOH603 2.0 30.0 1.0
OD1 A:ASP344 2.2 59.1 1.0
CG A:ASP344 2.4 38.3 1.0
NE2 A:HIS273 2.6 47.6 1.0
O A:HOH601 2.6 27.1 1.0
HE1 A:HIS273 2.6 57.2 1.0
CE1 A:HIS273 2.9 47.7 1.0
HE1 A:HIS67 2.9 29.5 1.0
HD21 A:ASN65 3.3 66.2 1.0
HZ3 A:LYS206 3.5 52.3 1.0
HZ1 A:LYS206 3.6 52.3 1.0
CE1 A:HIS67 3.7 24.6 1.0
CD2 A:HIS273 3.9 55.9 1.0
NZ A:LYS206 3.9 43.6 1.0
CB A:ASP344 4.0 48.9 1.0
ND2 A:ASN65 4.2 55.2 1.0
ND1 A:HIS273 4.2 68.9 1.0
HZ2 A:LYS206 4.2 52.3 1.0
HB2 A:ASP344 4.2 58.7 1.0
HE1 A:HIS253 4.3 68.7 1.0
NE2 A:HIS67 4.3 27.7 1.0
HD11 A:ILE143 4.3 24.8 1.0
HD2 A:HIS273 4.3 67.1 1.0
HB3 A:ASP344 4.4 58.7 1.0
HA A:ASP344 4.4 56.0 1.0
HD22 A:ASN65 4.6 66.2 1.0
CG A:HIS273 4.7 58.4 1.0
ND1 A:HIS67 4.7 23.5 1.0
NE2 A:HIS212 4.8 51.7 1.0
ND1 A:HIS253 4.8 65.7 1.0
CE1 A:HIS253 4.8 57.3 1.0
OG1 A:THR113 4.8 20.1 1.0
HE22 A:GLN300 4.8 70.0 1.0
CA A:ASP344 4.8 46.7 1.0
OE1 A:GLN300 4.9 66.9 1.0
HD13 A:ILE143 4.9 24.8 1.0
HD1 A:HIS273 4.9 82.6 1.0
OD1 A:ASN65 4.9 21.9 1.0
HD1 A:HIS67 4.9 28.2 1.0
HD13 A:ILE272 5.0 52.1 1.0
CG A:ASN65 5.0 30.1 1.0

Reference:

E.Sugrue, N.J.Fraser, D.H.Hopkins, P.D.Carr, J.L.Khurana, J.G.Oakeshott, C.Scott, C.J.Jackson. Evolutionary Expansion of the Amidohydrolase Superfamily in Response to Synthetic Compounds: Molinate and Diuron Hydrolases. To Be Published.
Page generated: Wed Dec 16 05:51:04 2020

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