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Zinc in PDB 4uer: 40S-EIF1-EIF1A-EIF3-EIF3J Translation Initiation Complex From Lachancea Kluyveri

Zinc Binding Sites:

The binding sites of Zinc atom in the 40S-EIF1-EIF1A-EIF3-EIF3J Translation Initiation Complex From Lachancea Kluyveri (pdb code 4uer). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the 40S-EIF1-EIF1A-EIF3-EIF3J Translation Initiation Complex From Lachancea Kluyveri, PDB code: 4uer:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 4uer

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Zinc binding site 1 out of 4 in the 40S-EIF1-EIF1A-EIF3-EIF3J Translation Initiation Complex From Lachancea Kluyveri


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 40S-EIF1-EIF1A-EIF3-EIF3J Translation Initiation Complex From Lachancea Kluyveri within 5.0Å range:
probe atom residue distance (Å) B Occ
5:Zn101

b:92.3
occ:1.00
SG 5:CYS77 2.2 91.9 1.0
SG 5:CYS74 2.3 96.0 1.0
SG 5:CYS26 2.3 92.5 1.0
SG 5:CYS23 2.4 87.8 1.0
CB 5:CYS74 2.9 96.0 1.0
CB 5:CYS77 3.0 92.2 1.0
CB 5:CYS23 3.2 87.4 1.0
CB 5:CYS26 3.4 92.9 1.0
N 5:CYS26 3.6 93.5 1.0
CA 5:CYS26 4.0 93.2 1.0
N 5:CYS74 4.1 96.7 1.0
CA 5:CYS74 4.1 96.2 1.0
CA 5:CYS77 4.2 92.2 1.0
N 5:CYS77 4.2 91.7 1.0
CB 5:LYS28 4.5 77.2 1.0
ND2 5:ASN25 4.5 0.6 1.0
N 5:SER27 4.5 86.4 1.0
C 5:CYS26 4.6 92.8 1.0
C 5:ASN25 4.6 0.5 1.0
CB 5:ASN25 4.6 1.0 1.0
CA 5:CYS23 4.6 87.6 1.0
N 5:LYS28 4.7 77.6 1.0
N 5:ASN25 4.9 0.8 1.0
CA 5:ASN25 4.9 0.8 1.0
C 5:CYS74 4.9 95.9 1.0

Zinc binding site 2 out of 4 in 4uer

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Zinc binding site 2 out of 4 in the 40S-EIF1-EIF1A-EIF3-EIF3J Translation Initiation Complex From Lachancea Kluyveri


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 40S-EIF1-EIF1A-EIF3-EIF3J Translation Initiation Complex From Lachancea Kluyveri within 5.0Å range:
probe atom residue distance (Å) B Occ
6:Zn101

b:0.1
occ:1.00
SG 6:CYS37 2.3 0.1 1.0
SG 6:CYS56 2.5 0.5 1.0
SG 6:CYS59 2.6 0.6 1.0
CB 6:CYS56 2.9 0.0 1.0
SG 6:CYS40 3.4 0.8 1.0
CG2 6:THR61 3.9 0.3 1.0
CB 6:CYS40 4.0 0.7 1.0
CB 6:CYS37 4.1 0.8 1.0
CB 6:CYS59 4.4 0.1 1.0
CA 6:CYS56 4.4 0.7 1.0
CB 6:THR61 4.5 0.6 1.0
O 6:CYS37 4.7 1.0 1.0
OG1 6:THR61 4.7 0.3 1.0
O 6:CYS59 4.9 0.1 1.0

Zinc binding site 3 out of 4 in 4uer

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Zinc binding site 3 out of 4 in the 40S-EIF1-EIF1A-EIF3-EIF3J Translation Initiation Complex From Lachancea Kluyveri


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 40S-EIF1-EIF1A-EIF3-EIF3J Translation Initiation Complex From Lachancea Kluyveri within 5.0Å range:
probe atom residue distance (Å) B Occ
9:Zn201

b:0.7
occ:1.00
SG 9:CYS141 2.2 99.3 1.0
SG 9:CYS144 2.2 0.3 1.0
SG 9:CYS121 2.4 0.7 1.0
SG 9:CYS126 2.8 0.9 1.0
CB 9:CYS141 2.9 99.5 1.0
CB 9:CYS144 3.2 0.2 1.0
CB 9:CYS121 3.6 0.6 1.0
O 9:VAL147 3.9 0.9 1.0
CB 9:ASN123 3.9 0.5 1.0
N 9:CYS144 4.0 1.0 1.0
CB 9:CYS126 4.0 0.9 1.0
CA 9:CYS144 4.2 0.0 1.0
CA 9:CYS141 4.4 99.4 1.0
CG2 9:VAL130 4.6 0.4 1.0
CG 9:ASN123 4.7 0.6 1.0
ND2 9:ASN123 4.8 0.4 1.0
C 9:CYS141 4.9 99.3 1.0
O 9:CYS141 4.9 99.3 1.0
CA 9:CYS121 5.0 0.8 1.0
OG1 9:THR125 5.0 0.2 1.0

Zinc binding site 4 out of 4 in 4uer

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Zinc binding site 4 out of 4 in the 40S-EIF1-EIF1A-EIF3-EIF3J Translation Initiation Complex From Lachancea Kluyveri


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of 40S-EIF1-EIF1A-EIF3-EIF3J Translation Initiation Complex From Lachancea Kluyveri within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn101

b:83.2
occ:1.00
SG N:CYS24 2.1 74.0 1.0
SG N:CYS39 2.3 79.5 1.0
SG N:CYS21 2.3 71.9 1.0
SG N:CYS42 2.5 70.3 1.0
CB N:CYS39 3.0 79.6 1.0
CB N:CYS42 3.1 70.1 1.0
CB N:CYS21 3.3 72.1 1.0
CB N:CYS24 3.3 74.3 1.0
N N:CYS39 3.9 79.8 1.0
N N:CYS24 4.0 74.7 1.0
CA N:CYS39 4.0 79.6 1.0
CA N:CYS24 4.2 74.6 1.0
N N:CYS42 4.2 69.6 1.0
CA N:CYS42 4.3 69.8 1.0
O N:CYS39 4.3 79.3 1.0
C N:CYS39 4.5 79.3 1.0
CB N:VAL23 4.5 69.8 1.0
O2' A:G1433 4.6 64.6 1.0
CB N:SER26 4.7 71.7 1.0
CG1 N:VAL23 4.7 69.8 1.0
CA N:CYS21 4.7 72.3 1.0
C N:CYS24 4.8 74.7 1.0
C N:VAL23 4.9 70.2 1.0

Reference:

C.H.S.Aylett, D.Boehringer, J.P.Erzberger, T.Schaefer, N.Ban. Structure of A Yeast 40S-EIF1-EIF1A-EIF3-EIF3J Initiation Complex Nat.Struct.Mol.Biol. 2015.
ISSN: ESSN 1545-9985
DOI: 10.1038/NSMB.2963
Page generated: Wed Dec 16 05:48:25 2020

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