Atomistry » Zinc » PDB 4u5g-4ufu » 4ueo
Atomistry »
  Zinc »
    PDB 4u5g-4ufu »
      4ueo »

Zinc in PDB 4ueo: Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site.

Enzymatic activity of Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site.

All present enzymatic activity of Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site.:
1.1.1.251;

Protein crystallography data

The structure of Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site., PDB code: 4ueo was solved by R.Benavente, M.Esteban-Torres, G.W.Kohring, A.Cortes-Cabrera, F.Gago, I.Acebron, B.De Las Rivas, R.Munoz, J.M.Mancheno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.235 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 43.306, 76.906, 108.651, 90.00, 95.51, 90.00
R / Rfree (%) 19.43 / 25.58

Zinc Binding Sites:

The binding sites of Zinc atom in the Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site. (pdb code 4ueo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site., PDB code: 4ueo:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in 4ueo

Go back to Zinc Binding Sites List in 4ueo
Zinc binding site 1 out of 5 in the Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1347

b:0.2
occ:1.00
 O A:HOH2026 2.1 49.3 1.0
NE2 A:HIS59 2.3 48.2 1.0
SG A:CYS38 2.6 62.7 1.0
O A:HOH2164 2.7 70.0 1.0
CE1 A:HIS59 3.1 53.4 1.0
CD2 A:HIS59 3.4 46.9 1.0
OG A:SER40 3.5 49.6 1.0
CB A:CYS38 3.6 69.1 1.0
OE2 A:GLU60 3.8 57.1 1.0
OE1 A:GLU144 4.0 48.2 1.0
OE2 A:GLU144 4.1 56.6 1.0
ND1 A:HIS59 4.3 50.8 1.0
CG A:HIS59 4.4 43.7 1.0
CD A:GLU144 4.5 52.1 1.0
CB A:SER40 4.6 63.1 1.0
CD A:GLU60 4.8 48.5 1.0

Zinc binding site 2 out of 5 in 4ueo

Go back to Zinc Binding Sites List in 4ueo
Zinc binding site 2 out of 5 in the Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1348

b:51.1
occ:1.00
 SG A:CYS92 2.3 42.1 1.0
SG A:CYS103 2.4 38.1 1.0
SG A:CYS89 2.4 36.8 1.0
SG A:CYS95 2.4 39.6 1.0
CB A:CYS95 3.2 44.1 1.0
CB A:CYS103 3.3 40.1 1.0
CB A:CYS92 3.4 43.0 1.0
CB A:CYS89 3.5 41.0 1.0
N A:CYS89 3.5 41.0 1.0
N A:PHE90 3.6 41.7 1.0
N A:CYS92 3.8 43.3 1.0
CA A:CYS89 3.9 45.8 1.0
CA A:CYS103 4.0 41.6 1.0
O A:HOH2050 4.1 49.0 1.0
C A:CYS89 4.1 49.5 1.0
CA A:CYS92 4.2 41.4 1.0
N A:THR91 4.2 44.8 1.0
N A:CYS95 4.3 45.0 1.0
CA A:CYS95 4.3 47.5 1.0
CA A:PHE90 4.5 38.7 1.0
C A:PRO88 4.7 40.7 1.0
O A:CYS92 4.7 39.7 1.0
C A:PHE90 4.8 44.8 1.0
C A:CYS92 4.8 43.6 1.0
CB A:PRO88 4.8 49.1 1.0
C A:THR91 4.9 50.4 1.0
C A:CYS103 4.9 47.2 1.0
N A:ALA104 4.9 48.2 1.0
CE A:LYS105 5.0 79.6 1.0

Zinc binding site 3 out of 5 in 4ueo

Go back to Zinc Binding Sites List in 4ueo
Zinc binding site 3 out of 5 in the Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1349

b:78.6
occ:1.00
 ND1 B:HIS267 2.3 61.2 1.0
ND1 A:HIS267 2.3 60.8 1.0
O A:HOH2165 2.3 36.4 1.0
CE1 A:HIS267 3.2 62.0 1.0
CG B:HIS267 3.2 54.9 1.0
CE1 B:HIS267 3.2 63.1 1.0
CG A:HIS267 3.3 62.9 1.0
CB B:HIS267 3.5 49.1 1.0
CB A:HIS267 3.7 57.2 1.0
NE2 A:HIS267 4.3 64.6 1.0
NE2 B:HIS267 4.3 61.6 1.0
CD2 B:HIS267 4.3 58.7 1.0
CD2 A:HIS267 4.4 61.7 1.0
CA B:HIS267 4.4 45.6 1.0
CA A:HIS267 4.7 55.6 1.0

Zinc binding site 4 out of 5 in 4ueo

Go back to Zinc Binding Sites List in 4ueo
Zinc binding site 4 out of 5 in the Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1347

b:1.0
occ:1.00
 O B:HOH2017 2.2 51.1 1.0
O B:HOH2019 2.5 55.8 1.0
NE2 B:HIS59 2.8 61.6 1.0
CB B:SER40 3.3 87.0 1.0
SG B:CYS38 3.3 0.7 1.0
OG B:SER40 3.6 85.8 1.0
CE1 B:HIS59 3.7 64.9 1.0
CD2 B:HIS59 3.8 58.2 1.0
OE2 B:GLU144 3.8 58.1 1.0
OE1 B:GLU144 4.1 61.4 1.0
CD B:GLU144 4.4 60.4 1.0
OE2 B:GLU60 4.4 56.9 1.0
CB B:CYS38 4.6 85.7 1.0
CA B:SER40 4.7 93.3 1.0
ND1 B:HIS59 4.9 60.1 1.0
N B:SER40 4.9 94.3 1.0
CG B:HIS59 4.9 54.3 1.0

Zinc binding site 5 out of 5 in 4ueo

Go back to Zinc Binding Sites List in 4ueo
Zinc binding site 5 out of 5 in the Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Open State of Galactitol-1-Phosphate 5-Dehydrogenase From E. Coli, with Zinc in the Catalytic Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1348

b:51.4
occ:1.00
 SG B:CYS92 2.3 43.2 1.0
SG B:CYS95 2.4 37.5 1.0
SG B:CYS103 2.4 40.6 1.0
SG B:CYS89 2.4 44.9 1.0
CB B:CYS95 3.2 46.3 1.0
CB B:CYS103 3.3 37.5 1.0
CB B:CYS92 3.3 47.5 1.0
N B:CYS89 3.6 42.5 1.0
CB B:CYS89 3.7 45.9 1.0
N B:CYS92 3.8 46.5 1.0
N B:PHE90 3.8 41.6 1.0
O B:HOH2030 3.9 46.1 1.0
CA B:CYS89 4.1 46.1 1.0
CA B:CYS103 4.1 47.2 1.0
CA B:CYS92 4.1 47.9 1.0
N B:CYS95 4.1 42.4 1.0
NZ B:LYS105 4.1 68.7 1.0
CA B:CYS95 4.2 48.5 1.0
C B:CYS89 4.3 47.8 1.0
N B:THR91 4.4 48.2 1.0
CA B:PHE90 4.7 41.2 1.0
CB B:PRO88 4.7 39.4 1.0
C B:PRO88 4.7 41.8 1.0
O B:CYS92 4.8 44.7 1.0
C B:CYS92 4.8 46.2 1.0
CE B:LYS105 4.8 60.2 1.0
C B:PHE90 4.9 45.4 1.0
C B:THR91 5.0 56.1 1.0
C B:CYS103 5.0 51.9 1.0

Reference:

R.Benavente, M.Esteban-Torres, G.W.Kohring, A.Cortes-Cabrera, P.A.Sanchez-Murcia, F.Gago, I.Acebron, B.De Las Rivas, R.Munoz, J.M.Mancheno. Enantioselective Oxidation of Galactitol 1-Phosphate By Galactitol-1-Phosphate 5-Dehydrogenase From Escherichia Coli Acta Crystallogr.,Sect.D V. 71 1540 2015.
ISSN: ISSN 0907-4449
PubMed: 26143925
DOI: 10.1107/S1399004715009281
Page generated: Sun Oct 27 09:02:07 2024

Last articles

Br in 8XBK
Br in 8YNO
Br in 8R1K
Br in 8R0Q
Br in 8R0W
Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy