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Zinc in PDB 4rdw: The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Guanidino-L-Glutaric Acid

Protein crystallography data

The structure of The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Guanidino-L-Glutaric Acid, PDB code: 4rdw was solved by A.A.Fedorov, E.V.Fedorov, R.Marti-Arbona, F.M.Raushel, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.60 / 1.59
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 133.223, 133.223, 124.852, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 16.5

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Guanidino-L-Glutaric Acid (pdb code 4rdw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Guanidino-L-Glutaric Acid, PDB code: 4rdw:

Zinc binding site 1 out of 1 in 4rdw

Go back to Zinc Binding Sites List in 4rdw
Zinc binding site 1 out of 1 in the The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Guanidino-L-Glutaric Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Guanidino-L-Glutaric Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:18.5
occ:1.00
O A:HOH601 1.9 20.8 1.0
NE2 A:HIS58 2.0 16.9 1.0
NE2 A:HIS56 2.1 16.9 1.0
NE2 A:HIS232 2.2 19.3 1.0
OD1 A:ASP320 2.5 17.5 1.0
CE1 A:HIS58 2.9 18.0 1.0
CE1 A:HIS56 3.0 15.2 1.0
CD2 A:HIS58 3.0 17.4 1.0
CD2 A:HIS56 3.1 16.9 1.0
CD2 A:HIS232 3.1 19.3 1.0
CE1 A:HIS232 3.1 18.8 1.0
CG A:ASP320 3.3 18.0 1.0
OD2 A:ASP320 3.6 18.6 1.0
N A:NGQ502 3.9 25.6 1.0
O A:HOH645 4.0 22.5 1.0
ND1 A:HIS58 4.1 17.4 1.0
NE2 A:HIS269 4.1 21.1 1.0
CG A:HIS58 4.1 15.1 1.0
ND1 A:HIS56 4.1 16.9 1.0
CF A:NGQ502 4.2 25.7 1.0
CG A:HIS56 4.2 15.4 1.0
ND1 A:HIS232 4.2 19.4 1.0
CG A:HIS232 4.3 18.2 1.0
NG A:NGQ502 4.4 25.6 1.0
O1 A:NGQ502 4.4 24.6 1.0
CA A:NGQ502 4.5 23.6 1.0
C A:NGQ502 4.5 25.0 1.0
CB A:ASP320 4.6 16.6 1.0
CE1 A:HIS269 4.7 20.1 1.0
NF A:NGQ502 4.8 26.7 1.0
CG1 A:VAL268 4.9 18.4 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, R.Marti-Arbona, F.M.Raushel, S.C.Almo. The Structure of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa Complexed with N-Guanidino-L-Glutaric Acid To Be Published.
Page generated: Wed Dec 16 05:45:39 2020

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