Zinc in PDB 4qbf: Crystal Structure of A Stable Adenylate Kinase Variant AKLSE2

All present enzymatic activity of Crystal Structure of A Stable Adenylate Kinase Variant AKLSE2:
2.7.4.3;

The structure of Crystal Structure of A Stable Adenylate Kinase Variant AKLSE2, PDB code: 4qbf was solved by S.Moon, E.Bae, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.293, 47.202, 109.328, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 22.2

The binding sites of Zinc atom in the Crystal Structure of A Stable Adenylate Kinase Variant AKLSE2 (pdb code 4qbf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Stable Adenylate Kinase Variant AKLSE2, PDB code: 4qbf:

Zinc binding site 1 out of 1 in the Crystal Structure of A Stable Adenylate Kinase Variant AKLSE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Stable Adenylate Kinase Variant AKLSE2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:24.1 occ:1.00 OD2 A:ASP153 2.1 19.0 1.0 SG A:CYS133 2.3 19.9 1.0 SG A:CYS130 2.3 20.0 1.0 SG A:CYS150 2.3 17.8 1.0 OD1 A:ASP153 2.8 17.7 1.0 CG A:ASP153 2.8 17.8 1.0 CB A:CYS130 3.1 18.6 1.0 CB A:CYS150 3.1 17.6 1.0 CB A:CYS133 3.2 22.5 1.0 N A:CYS133 3.7 21.9 1.0 CA A:CYS133 4.1 21.8 1.0 CB A:ASP153 4.2 19.1 1.0 CB A:VAL132 4.3 21.2 1.0 CB A:LYS152 4.5 23.6 1.0 CA A:CYS130 4.5 18.2 1.0 N A:ASP153 4.6 18.9 1.0 CG1 A:VAL132 4.6 22.9 1.0 CA A:CYS150 4.6 17.5 1.0 C A:VAL132 4.7 22.8 1.0 C A:CYS133 4.8 22.3 1.0 CB A:THR135 4.8 20.9 1.0 N A:GLY134 4.8 22.6 1.0 CA A:VAL132 4.9 22.3 1.0 OG1 A:THR135 4.9 21.4 1.0 N A:VAL132 4.9 21.7 1.0 CA A:ASP153 5.0 19.4 1.0

S.Moon, R.M.Bannen, T.J.Rutkoski, G.N.Phillips, E.Bae. Effectiveness and Limitations of Local Structural Entropy Optimization in the Thermal Stabilization of Mesophilic and Thermophilic Adenylate Kinases Proteins V. 82 2014.
ISSN: ESSN 1097-0134
DOI: 10.1002/PROT.24627