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Zinc in PDB 4pxy: Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution, PDB code: 4pxy was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.36 / 1.50
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 132.666, 132.666, 75.476, 90.00, 90.00, 120.00
R / Rfree (%) 13.6 / 16.1

Other elements in 4pxy:

The structure of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Zinc atom in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution (pdb code 4pxy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 13 binding sites of Zinc where determined in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution, PDB code: 4pxy:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 13 in 4pxy

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Zinc binding site 1 out of 13 in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:12.5
occ:1.00
ND1 A:HIS234 2.0 12.0 1.0
OE2 A:GLU178 2.0 14.6 1.0
NE2 A:HIS120 2.1 12.0 1.0
NE2 A:HIS48 2.1 12.8 1.0
OE1 A:GLU178 2.6 13.1 1.0
CD A:GLU178 2.6 13.9 1.0
CE1 A:HIS234 2.9 11.8 1.0
CD2 A:HIS48 2.9 12.0 1.0
CD2 A:HIS120 3.0 12.4 1.0
CE1 A:HIS120 3.1 12.9 1.0
CG A:HIS234 3.1 10.9 1.0
CE1 A:HIS48 3.1 13.2 1.0
CB A:HIS234 3.5 13.7 1.0
O A:HOH454 3.6 21.9 1.0
NE2 A:HIS234 4.1 13.1 1.0
CG A:GLU178 4.1 13.1 1.0
CG A:HIS48 4.1 12.2 1.0
ND1 A:HIS120 4.2 11.4 1.0
CD2 A:HIS234 4.2 12.3 1.0
CG A:HIS120 4.2 10.7 1.0
ND1 A:HIS48 4.2 13.7 1.0
CA A:HIS234 4.3 11.2 1.0
OE1 A:GLU45 4.7 31.6 1.0
OE2 A:GLU45 4.7 27.3 1.0
CD A:GLU45 4.7 25.9 1.0
OH A:TYR180 4.8 21.8 1.0
O A:GLY233 4.8 11.9 1.0

Zinc binding site 2 out of 13 in 4pxy

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Zinc binding site 2 out of 13 in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn303

b:19.1
occ:0.80
ND1 A:HIS43 1.8 24.8 1.0
O A:HOH455 2.1 21.6 0.8
O B:HOH636 2.1 17.9 0.8
O A:HOH670 2.1 25.1 0.8
OD2 B:ASP66 2.2 18.7 1.0
OD1 B:ASP66 2.2 20.4 1.0
CG B:ASP66 2.5 15.5 1.0
CE1 A:HIS43 2.8 27.1 1.0
CG A:HIS43 2.9 20.8 1.0
CB A:HIS43 3.5 17.1 1.0
O B:HOH514 3.7 24.6 1.0
NE2 A:HIS43 3.9 29.8 1.0
CA A:HIS43 3.9 14.9 1.0
CB B:ASP66 4.0 15.2 1.0
CD2 A:HIS43 4.0 27.7 1.0
O B:HOH608 4.1 39.5 1.0
O B:HOH455 4.2 18.7 1.0
O B:HOH639 4.2 37.9 1.0
O B:HOH437 4.3 16.6 1.0
O B:HOH457 4.8 24.7 1.0
N A:HIS43 4.8 13.5 1.0
CA B:ASP66 4.9 12.6 1.0

Zinc binding site 3 out of 13 in 4pxy

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Zinc binding site 3 out of 13 in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn304

b:27.1
occ:0.80
O A:HOH686 1.9 32.0 0.8
OE1 A:GLU160 2.2 23.2 1.0
OE2 A:GLU160 2.6 26.9 1.0
CD A:GLU160 2.7 22.8 1.0
CG A:GLU160 4.2 17.9 1.0
CB A:ALA170 4.5 16.7 1.0
O A:HOH570 4.5 25.9 1.0
O A:HOH691 4.5 24.8 0.3
CB A:GLU160 4.9 17.1 1.0

Zinc binding site 4 out of 13 in 4pxy

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Zinc binding site 4 out of 13 in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn305

b:19.3
occ:0.80
OD1 A:ASP191 2.0 16.4 1.0
O A:HOH681 2.0 14.2 0.8
O A:HOH438 2.1 15.9 0.8
CG A:ASP191 2.6 20.1 1.0
OD2 A:ASP191 2.7 28.0 1.0
CB A:ASP191 4.1 17.4 1.0
O A:HOH621 4.1 41.0 1.0
OD1 A:ASN224 4.7 30.3 1.0
ND2 A:ASN224 4.7 30.7 1.0
CA A:ASP191 4.8 16.1 1.0
O A:HOH630 4.9 35.2 1.0

Zinc binding site 5 out of 13 in 4pxy

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Zinc binding site 5 out of 13 in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn306

b:9.1
occ:0.20
O A:ILE240 2.2 11.2 1.0
OD1 A:ASP241 2.2 15.6 1.0
C A:ILE240 3.3 10.4 1.0
CG A:ASP241 3.4 15.9 1.0
CA A:ASP241 3.7 13.1 1.0
N A:ASP241 3.9 11.2 1.0
O A:HOH460 3.9 32.5 0.3
CB A:ASP241 4.1 15.5 1.0
CB A:ILE240 4.4 10.6 1.0
CA A:ILE240 4.4 11.1 1.0
OD2 A:ASP241 4.4 19.0 1.0
O A:HOH505 4.4 23.5 0.3
CG1 A:ILE240 4.6 11.1 1.0
C A:ASP241 5.0 10.7 1.0

Zinc binding site 6 out of 13 in 4pxy

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Zinc binding site 6 out of 13 in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn307

b:34.4
occ:0.30
O A:HOH691 2.0 24.8 0.3
O A:HOH690 2.0 18.8 0.3
OE2 A:GLU161 2.4 34.4 1.0
OE1 A:GLU161 3.0 44.2 1.0
CD A:GLU161 3.1 29.3 1.0
O A:HOH624 3.9 37.4 1.0
CG A:GLU161 4.5 28.0 1.0
O A:GLU160 4.9 18.0 1.0

Zinc binding site 7 out of 13 in 4pxy

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Zinc binding site 7 out of 13 in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn308

b:41.2
occ:0.30
O A:HOH512 2.0 23.8 0.3
NE2 A:HIS130 2.3 38.0 1.0
CE1 A:HIS130 2.5 36.6 1.0
CD2 A:HIS130 3.6 35.5 1.0
ND1 A:HIS130 3.8 39.2 1.0
O A:LYS127 4.0 26.3 1.0
OD1 A:ASN128 4.1 30.9 1.0
CG A:HIS130 4.4 30.8 1.0
CA A:ASN128 4.8 24.2 1.0
C A:LYS127 5.0 22.4 1.0

Zinc binding site 8 out of 13 in 4pxy

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Zinc binding site 8 out of 13 in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn309

b:31.6
occ:0.30
O A:HOH685 2.0 14.8 0.3
ND1 A:HIS130 2.1 39.2 1.0
CG A:HIS130 2.8 30.8 1.0
CE1 A:HIS130 2.9 36.6 1.0
CB A:HIS130 3.2 24.6 1.0
CD2 A:HIS130 3.8 35.5 1.0
NE2 A:HIS130 3.8 38.0 1.0
CA A:HIS130 3.9 20.8 1.0
C A:HIS130 4.8 19.6 1.0
N A:HIS130 4.9 20.4 1.0
O A:HOH549 5.0 32.0 1.0
O A:HIS130 5.0 19.2 1.0

Zinc binding site 9 out of 13 in 4pxy

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Zinc binding site 9 out of 13 in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn303

b:12.7
occ:1.00
OE2 B:GLU178 2.0 13.3 1.0
NE2 B:HIS120 2.1 12.1 1.0
ND1 B:HIS234 2.1 13.5 1.0
NE2 B:HIS48 2.1 13.5 1.0
OE1 B:GLU178 2.6 13.3 1.0
CD B:GLU178 2.6 13.4 1.0
CD2 B:HIS48 3.0 12.2 1.0
CE1 B:HIS234 3.0 13.5 1.0
CE1 B:HIS120 3.0 13.0 1.0
CD2 B:HIS120 3.0 13.6 1.0
CG B:HIS234 3.1 12.4 1.0
CE1 B:HIS48 3.1 14.4 1.0
CB B:HIS234 3.5 11.3 1.0
O B:HOH453 3.5 23.4 1.0
CG B:GLU178 4.1 14.9 1.0
NE2 B:HIS234 4.1 13.5 1.0
CG B:HIS48 4.1 12.3 1.0
ND1 B:HIS120 4.2 12.8 1.0
ND1 B:HIS48 4.2 14.3 1.0
CG B:HIS120 4.2 11.3 1.0
CD2 B:HIS234 4.2 13.2 1.0
CA B:HIS234 4.3 10.6 1.0
OE2 B:GLU45 4.7 29.6 1.0
CD B:GLU45 4.7 23.7 1.0
OE1 B:GLU45 4.7 32.3 1.0
O B:GLY233 4.8 12.2 1.0
OH B:TYR180 4.8 20.2 1.0

Zinc binding site 10 out of 13 in 4pxy

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Zinc binding site 10 out of 13 in the Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of A Hypothetical Protein (BACUNI_01602) From Bacteroides Uniformis Atcc 8492 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn304

b:19.6
occ:0.80
ND1 B:HIS43 2.0 29.1 1.0
O B:HOH501 2.0 23.6 0.8
O B:HOH637 2.1 22.8 0.8
OD2 A:ASP66 2.1 20.4 1.0
O A:HOH593 2.2 20.5 0.8
OD1 A:ASP66 2.2 21.0 1.0
CG A:ASP66 2.5 15.7 1.0
CE1 B:HIS43 2.9 29.9 1.0
CG B:HIS43 3.0 23.9 1.0
CB B:HIS43 3.5 18.0 1.0
O A:HOH568 3.8 26.9 1.0
CA B:HIS43 3.9 15.8 1.0
CB A:ASP66 4.0 13.3 1.0
NE2 B:HIS43 4.0 34.5 1.0
O B:HOH654 4.1 52.9 1.0
CD2 B:HIS43 4.1 29.6 1.0
O A:HOH651 4.2 37.1 1.0
O A:HOH500 4.3 20.0 1.0
O A:HOH417 4.3 15.9 1.0
O A:HOH477 4.8 24.7 1.0
N B:HIS43 4.8 14.4 1.0
CA A:ASP66 4.9 12.7 1.0
O B:GLN42 5.0 15.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Dec 16 05:42:11 2020

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