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Zinc in PDB 4pvb: Crystal Structure of Aminopeptidase N in Complex with the Phosphonic Acid Analogue of Leucine (D-(S)-Leup)

Enzymatic activity of Crystal Structure of Aminopeptidase N in Complex with the Phosphonic Acid Analogue of Leucine (D-(S)-Leup)

All present enzymatic activity of Crystal Structure of Aminopeptidase N in Complex with the Phosphonic Acid Analogue of Leucine (D-(S)-Leup):
3.4.11.2;

Protein crystallography data

The structure of Crystal Structure of Aminopeptidase N in Complex with the Phosphonic Acid Analogue of Leucine (D-(S)-Leup), PDB code: 4pvb was solved by B.Nocek, S.Vassiliou, L.Berlicki, R.Mulligan, A.Mucha, A.Joachimak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.00 / 2.10
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 224.264, 224.264, 57.943, 90.00, 90.00, 120.00
R / Rfree (%) 17.7 / 23.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Aminopeptidase N in Complex with the Phosphonic Acid Analogue of Leucine (D-(S)-Leup) (pdb code 4pvb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Aminopeptidase N in Complex with the Phosphonic Acid Analogue of Leucine (D-(S)-Leup), PDB code: 4pvb:

Zinc binding site 1 out of 1 in 4pvb

Go back to Zinc Binding Sites List in 4pvb
Zinc binding site 1 out of 1 in the Crystal Structure of Aminopeptidase N in Complex with the Phosphonic Acid Analogue of Leucine (D-(S)-Leup)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Aminopeptidase N in Complex with the Phosphonic Acid Analogue of Leucine (D-(S)-Leup) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:34.0
occ:0.70
 O13 A:2WW1001 2.1 30.3 1.0
OE1 A:GLU316 2.1 29.7 1.0
O11 A:2WW1001 2.1 35.0 1.0
NE2 A:HIS297 2.1 26.7 1.0
NE2 A:HIS293 2.1 24.0 1.0
P11 A:2WW1001 2.5 34.9 1.0
CD A:GLU316 2.8 25.8 1.0
OE2 A:GLU316 2.9 25.3 1.0
CD2 A:HIS293 3.0 22.3 1.0
CD2 A:HIS297 3.1 25.0 1.0
CE1 A:HIS297 3.1 25.0 1.0
CE1 A:HIS293 3.2 21.9 1.0
N12 A:2WW1001 3.6 27.3 1.0
C3 A:2WW1001 3.6 32.7 1.0
O12 A:2WW1001 3.9 39.0 1.0
OH A:TYR377 4.1 21.8 1.0
CE2 A:TYR377 4.2 20.5 1.0
OE1 A:GLU260 4.2 24.3 1.0
CG A:HIS293 4.2 21.9 1.0
ND1 A:HIS297 4.2 24.9 1.0
CG A:HIS297 4.2 24.4 1.0
ND1 A:HIS293 4.2 21.4 1.0
CG A:GLU316 4.3 26.1 1.0
OE1 A:GLU294 4.3 26.2 1.0
CZ A:TYR377 4.6 21.6 1.0
OE2 A:GLU294 4.7 28.7 1.0
CD A:GLU260 4.7 24.0 1.0
OE2 A:GLU260 4.7 24.8 1.0
O A:HOH1382 4.7 44.8 1.0
CG2 A:THR319 4.8 25.2 1.0
CB A:GLU316 4.9 25.4 1.0
CD A:GLU294 4.9 26.9 1.0
C1 A:2WW1001 5.0 30.8 1.0

Reference:

B.Nocek, S.Vassiliou, R.Mulligan, E.Weglarz-Tomczak, L.Berlicki, M.Pawelczak, A.Mucha, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg). Crystal Structure of Aminopeptidase N in Complex with the Phosphonic Acid Analogue of Leucine (D-(S)-Leup) To Be Published.
Page generated: Wed Aug 20 21:35:03 2025

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