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Zinc in PDB 4put: Crystal Structure of the Arabidopsis Thaliana TOP2 Oligopeptidase

Enzymatic activity of Crystal Structure of the Arabidopsis Thaliana TOP2 Oligopeptidase

All present enzymatic activity of Crystal Structure of the Arabidopsis Thaliana TOP2 Oligopeptidase:
3.4.24.70;

Protein crystallography data

The structure of Crystal Structure of the Arabidopsis Thaliana TOP2 Oligopeptidase, PDB code: 4put was solved by R.Wang, K.Rajagopalan, L.Tong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.09 / 3.00
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 168.740, 168.740, 175.590, 90.00, 90.00, 120.00
R / Rfree (%) 20.7 / 24.7

Other elements in 4put:

The structure of Crystal Structure of the Arabidopsis Thaliana TOP2 Oligopeptidase also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Arabidopsis Thaliana TOP2 Oligopeptidase (pdb code 4put). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Arabidopsis Thaliana TOP2 Oligopeptidase, PDB code: 4put:

Zinc binding site 1 out of 1 in 4put

Go back to Zinc Binding Sites List in 4put
Zinc binding site 1 out of 1 in the Crystal Structure of the Arabidopsis Thaliana TOP2 Oligopeptidase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Arabidopsis Thaliana TOP2 Oligopeptidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:30.0
occ:1.00
 NE2 A:HIS487 2.1 30.9 1.0
OE1 A:GLU513 2.2 35.7 1.0
OE2 A:GLU513 2.3 31.0 1.0
NE2 A:HIS483 2.3 26.9 1.0
CL A:CL802 2.5 46.3 1.0
CD A:GLU513 2.5 31.9 1.0
CD2 A:HIS487 3.0 21.7 1.0
HD2 A:HIS487 3.1 14.4 1.0
HG A:SER516 3.1 14.4 1.0
CE1 A:HIS487 3.2 31.1 1.0
CD2 A:HIS483 3.3 26.2 1.0
CE1 A:HIS483 3.3 25.2 1.0
HD2 A:HIS483 3.4 14.4 1.0
HE1 A:HIS487 3.5 14.4 1.0
HE1 A:HIS483 3.5 14.4 1.0
HB2 A:SER516 3.9 14.4 1.0
OG A:SER516 4.0 22.6 1.0
CG A:GLU513 4.0 27.1 1.0
OE2 A:GLU484 4.2 42.2 1.0
CG A:HIS487 4.2 24.4 1.0
ND1 A:HIS487 4.2 30.0 1.0
CB A:SER516 4.3 24.0 1.0
HB3 A:SER516 4.4 14.4 1.0
ND1 A:HIS483 4.4 28.1 1.0
CG A:HIS483 4.5 26.9 1.0
HA A:GLU513 4.5 14.4 1.0
HG3 A:GLU513 4.7 14.4 1.0
HG2 A:GLU513 4.8 14.4 1.0
HB3 A:GLU513 4.9 14.4 1.0
CB A:GLU513 4.9 25.3 1.0
CD A:GLU484 4.9 41.7 1.0
OE1 A:GLU484 4.9 44.1 1.0

Reference:

R.Wang, K.Rajagopalan, K.Sadre-Bazzaz, M.Moreau, D.F.Klessig, L.Tong. Structure of the Arabidopsis Thaliana TOP2 Oligopeptidase. Acta Crystallogr F Struct V. 70 555 2014BIOL Commun.
ISSN: ISSN 1744-3091
PubMed: 24817709
DOI: 10.1107/S2053230X14006128
Page generated: Wed Aug 20 21:34:57 2025

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