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Zinc in PDB 4puc: Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution, PDB code: 4puc was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 89.86 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.540, 112.190, 150.080, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution (pdb code 4puc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution, PDB code: 4puc:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 4puc

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Zinc binding site 1 out of 6 in the Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:26.8
occ:1.00
 O A:HOH1011 1.9 25.6 1.0
OE2 A:GLU175 2.1 24.0 1.0
O A:HOH739 2.1 24.4 1.0
O A:HOH1010 2.2 28.6 1.0
O A:HOH723 2.3 25.8 1.0
CD A:GLU175 3.1 24.5 1.0
OE1 A:GLU175 3.4 26.5 1.0
O A:HOH1044 4.1 33.8 1.0
O A:HOH1012 4.1 29.4 1.0
O A:HOH1086 4.3 38.4 1.0
OH A:TYR513 4.4 28.2 1.0
CG A:GLU175 4.5 24.6 1.0
O A:HOH1009 4.7 35.7 1.0

Zinc binding site 2 out of 6 in 4puc

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Zinc binding site 2 out of 6 in the Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn602

b:25.7
occ:1.00
 OD1 A:ASP377 2.0 27.4 1.0
OD2 B:ASP257 2.0 26.8 1.0
O A:ACT604 2.1 33.8 1.0
OXT A:ACT605 2.2 30.2 1.0
O A:ACT605 2.4 40.7 1.0
C A:ACT605 2.6 34.4 1.0
CG B:ASP257 2.7 24.9 1.0
OD1 B:ASP257 2.7 23.8 1.0
CG A:ASP377 3.0 26.6 1.0
C A:ACT604 3.0 40.6 1.0
OXT A:ACT604 3.3 49.0 1.0
OD2 A:ASP377 3.4 27.4 1.0
OG1 B:THR254 3.9 32.8 1.0
CH3 A:ACT605 4.1 43.5 1.0
O A:HOH703 4.1 27.6 1.0
OG1 A:THR374 4.1 27.2 1.0
CB B:ASP257 4.2 23.4 1.0
CB A:ASP377 4.4 24.3 1.0
CH3 A:ACT604 4.4 37.5 1.0
N A:ASP377 4.5 23.8 1.0
CE B:LYS213 4.6 25.6 1.0
CA A:ASP377 4.7 24.3 1.0
CE B:LYS216 4.7 28.3 1.0
CB A:ALA376 4.8 24.7 1.0
NZ B:LYS213 4.8 25.9 1.0
CD B:LYS216 5.0 26.9 1.0

Zinc binding site 3 out of 6 in 4puc

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Zinc binding site 3 out of 6 in the Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn603

b:24.9
occ:1.00
 OD1 B:ASP377 2.0 26.6 1.0
OD2 A:ASP257 2.0 23.1 1.0
O A:ACT606 2.2 30.8 1.0
O B:ACT604 2.3 38.1 1.0
OXT A:ACT606 2.5 40.4 1.0
C A:ACT606 2.7 30.5 1.0
OXT B:ACT604 2.7 54.2 1.0
CG A:ASP257 2.8 22.8 1.0
C B:ACT604 2.8 43.4 1.0
OD1 A:ASP257 2.9 20.8 1.0
CG B:ASP377 3.0 27.4 1.0
OD2 B:ASP377 3.4 29.0 1.0
O A:HOH701 3.8 24.9 1.0
OG1 A:THR254 3.9 30.2 1.0
CH3 A:ACT606 4.1 34.5 1.0
OG1 B:THR374 4.2 24.9 1.0
CB A:ASP257 4.2 23.0 1.0
CH3 B:ACT604 4.3 36.2 1.0
CB B:ASP377 4.4 26.9 1.0
CE A:LYS216 4.5 26.9 1.0
N B:ASP377 4.6 25.7 1.0
CA B:ASP377 4.7 26.5 1.0
CE A:LYS213 4.7 28.3 1.0
CD A:LYS216 4.7 24.5 1.0
CB B:ALA376 4.9 26.4 1.0

Zinc binding site 4 out of 6 in 4puc

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Zinc binding site 4 out of 6 in the Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn601

b:47.5
occ:1.00
 OD1 B:ASP108 2.0 38.6 1.0
O B:HOH1070 2.2 37.4 1.0
O B:HOH746 2.2 34.8 1.0
O B:HOH821 2.3 34.1 1.0
O B:HOH1068 2.6 38.7 1.0
CG B:ASP108 3.0 36.7 1.0
OD2 B:ASP108 3.3 36.6 1.0
O B:HOH1069 3.8 36.7 1.0
O B:ILE106 4.2 30.8 1.0
CB B:ASP108 4.3 33.9 1.0
O B:HOH847 4.4 29.4 1.0
CA B:ASP108 4.6 32.2 1.0
O B:HOH1038 4.7 22.1 1.0
N B:ASP108 4.7 29.8 1.0
O B:HOH907 4.7 37.6 1.0

Zinc binding site 5 out of 6 in 4puc

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Zinc binding site 5 out of 6 in the Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn602

b:65.5
occ:1.00
 O A:HOH714 2.2 32.7 1.0
O B:HOH1067 2.2 36.6 1.0
OE2 B:GLU253 2.4 49.8 1.0
OE1 B:GLU253 3.0 54.7 1.0
CD B:GLU253 3.0 46.4 1.0
OE2 A:GLU253 3.1 45.1 1.0
O A:HOH1104 3.8 37.6 1.0
CD A:GLU253 3.8 43.5 1.0
OE1 A:GLU253 3.8 58.0 1.0
NH1 A:ARG360 4.2 28.6 0.5
NH1 A:ARG360 4.2 22.8 0.5
NH1 B:ARG360 4.4 53.4 1.0
CG B:GLU253 4.5 40.3 1.0
O B:HOH843 4.9 32.2 1.0
CZ A:ARG360 4.9 27.2 0.5
O B:HOH1071 4.9 31.8 1.0
NH2 A:ARG360 4.9 25.6 0.5
CZ A:ARG360 5.0 22.9 0.5

Zinc binding site 6 out of 6 in 4puc

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Zinc binding site 6 out of 6 in the Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of A Susd Homolog (BACUNI_02643) From Bacteroides Uniformis Atcc 8492 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn603

b:84.5
occ:1.00
 O B:HOH1081 1.9 46.8 1.0
O B:HOH1082 1.9 46.1 1.0
O B:HOH1080 2.2 59.1 1.0
O B:HOH1083 2.3 63.5 1.0
OD2 B:ASP43 2.6 31.4 1.0
OD1 B:ASP43 2.8 30.6 1.0
CG B:ASP43 3.1 31.4 1.0
O B:ASP38 4.0 47.9 1.0
OG1 B:THR40 4.1 28.6 1.0
CB B:ASP43 4.6 29.4 1.0
N B:THR40 4.7 34.1 1.0
CA B:LEU39 4.9 38.8 1.0
C B:ASP38 4.9 48.8 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Dec 16 05:41:43 2020

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