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Zinc in PDB 4pqa: Crystal Structure of Succinyl-Diaminopimelate Desuccinylase From Neisseria Meningitidis MC58 in Complex with the Inhibitor Captopril

Enzymatic activity of Crystal Structure of Succinyl-Diaminopimelate Desuccinylase From Neisseria Meningitidis MC58 in Complex with the Inhibitor Captopril

All present enzymatic activity of Crystal Structure of Succinyl-Diaminopimelate Desuccinylase From Neisseria Meningitidis MC58 in Complex with the Inhibitor Captopril:
3.5.1.18;

Protein crystallography data

The structure of Crystal Structure of Succinyl-Diaminopimelate Desuccinylase From Neisseria Meningitidis MC58 in Complex with the Inhibitor Captopril, PDB code: 4pqa was solved by B.Nocek, A.Starus, R.Holz, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.55 / 1.78
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 116.921, 151.487, 55.098, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Succinyl-Diaminopimelate Desuccinylase From Neisseria Meningitidis MC58 in Complex with the Inhibitor Captopril (pdb code 4pqa). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Succinyl-Diaminopimelate Desuccinylase From Neisseria Meningitidis MC58 in Complex with the Inhibitor Captopril, PDB code: 4pqa:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4pqa

Go back to Zinc Binding Sites List in 4pqa
Zinc binding site 1 out of 2 in the Crystal Structure of Succinyl-Diaminopimelate Desuccinylase From Neisseria Meningitidis MC58 in Complex with the Inhibitor Captopril


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Succinyl-Diaminopimelate Desuccinylase From Neisseria Meningitidis MC58 in Complex with the Inhibitor Captopril within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:18.1
occ:1.00
OD1 A:ASP101 2.0 15.8 1.0
NE2 A:HIS68 2.0 19.6 1.0
OE1 A:GLU164 2.0 20.4 1.0
S A:X8Z401 2.3 17.9 1.0
OE2 A:GLU164 2.6 17.9 1.0
CD A:GLU164 2.6 21.5 1.0
CE1 A:HIS68 2.9 19.8 1.0
CG A:ASP101 3.0 14.6 1.0
CD2 A:HIS68 3.1 17.9 1.0
C1 A:X8Z401 3.3 20.7 1.0
ZN A:ZN404 3.4 17.7 0.9
OD2 A:ASP101 3.4 16.2 1.0
OE1 A:GLU135 3.7 24.1 1.0
OE2 A:GLU136 3.8 18.4 1.0
ND1 A:HIS68 4.1 18.0 1.0
CG A:GLU164 4.2 16.6 1.0
CG A:HIS68 4.2 17.5 1.0
CD A:GLU135 4.2 25.8 1.0
C3 A:X8Z401 4.3 24.7 1.0
CB A:ASP101 4.4 17.0 1.0
C2 A:X8Z401 4.4 22.9 1.0
CG A:MET102 4.5 19.5 1.0
SD A:MET102 4.5 20.4 1.0
CD A:GLU136 4.5 19.7 1.0
CB A:MET102 4.5 17.7 1.0
OE2 A:GLU135 4.6 30.8 1.0
CD A:PRO165 4.6 16.2 1.0
CA A:ASP101 4.7 16.7 1.0
C A:ASP101 4.8 20.1 1.0
CB A:GLU164 4.8 16.7 1.0
OE1 A:GLU136 4.9 21.2 1.0
O A:ASP101 5.0 20.3 1.0

Zinc binding site 2 out of 2 in 4pqa

Go back to Zinc Binding Sites List in 4pqa
Zinc binding site 2 out of 2 in the Crystal Structure of Succinyl-Diaminopimelate Desuccinylase From Neisseria Meningitidis MC58 in Complex with the Inhibitor Captopril


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Succinyl-Diaminopimelate Desuccinylase From Neisseria Meningitidis MC58 in Complex with the Inhibitor Captopril within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn404

b:17.7
occ:0.95
OD2 A:ASP101 1.9 16.2 1.0
OE2 A:GLU136 1.9 18.4 1.0
NE2 A:HIS350 2.0 19.6 1.0
S A:X8Z401 2.3 17.9 1.0
CD A:GLU136 2.5 19.7 1.0
OE1 A:GLU136 2.6 21.2 1.0
CD2 A:HIS350 3.0 19.3 1.0
CE1 A:HIS350 3.0 20.1 1.0
CG A:ASP101 3.0 14.6 1.0
C1 A:X8Z401 3.1 20.7 1.0
OD1 A:ASP101 3.3 15.8 1.0
ZN A:ZN403 3.4 18.1 1.0
O A:HOH584 3.9 21.2 1.0
O A:HOH625 3.9 39.7 1.0
CG A:GLU136 4.1 23.2 1.0
ND1 A:HIS350 4.1 20.6 1.0
CG A:HIS350 4.1 21.2 1.0
OE1 A:GLU135 4.1 24.1 1.0
CB A:ASP101 4.3 17.0 1.0
CE1 A:HIS68 4.3 19.8 1.0
NE2 A:HIS68 4.4 19.6 1.0
C2 A:X8Z401 4.4 22.9 1.0
CG1 A:VAL72 4.6 23.1 1.0
CD1 A:ILE349 4.8 32.4 1.0

Reference:

B.Nocek, A.Starus, R.Holz, W.F.Anderson, A.Joachimiak. Crystal Structure of Succinyl-Diaminopimelate Desuccinylase From Neisseria Meningitidis MC58 in Complex with the Inhibitor Captopril To Be Published.
Page generated: Sun Oct 27 06:02:30 2024

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