Zinc in PDB 4pe3: Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
Protein crystallography data
The structure of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure, PDB code: 4pe3
was solved by
M.W.Vetting,
N.F.Al Obaidi,
L.L.Morisco,
S.R.Wasserman,
M.Stead,
J.D.Attonito,
A.Scott Glenn,
S.Chowdhury,
B.Evans,
B.Hillerich,
J.Love,
R.D.Seidel,
K.L.Whalen,
J.A.Gerlt,
S.C.Almo,
Enzyme Function Initiative(Efi),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.61 /
1.35
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.072,
97.938,
35.788,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.9 /
19.6
|
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Zinc atom in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
(pdb code 4pe3). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 11 binding sites of Zinc where determined in the
Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure, PDB code: 4pe3:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 11 in 4pe3
Go back to
Zinc Binding Sites List in 4pe3
Zinc binding site 1 out
of 11 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn405
b:15.2
occ:0.86
|
OD1
|
A:ASP231
|
2.0
|
12.1
|
1.0
|
O
|
A:HOH707
|
2.0
|
15.4
|
1.0
|
OE1
|
A:GLU173
|
2.1
|
14.3
|
1.0
|
O
|
A:HOH710
|
2.1
|
26.9
|
1.0
|
OE2
|
A:GLU173
|
2.1
|
22.6
|
1.0
|
O
|
A:TYR232
|
2.4
|
19.1
|
1.0
|
CD
|
A:GLU173
|
2.4
|
13.4
|
1.0
|
CG
|
A:ASP231
|
2.8
|
14.2
|
1.0
|
OD2
|
A:ASP231
|
3.1
|
13.6
|
1.0
|
C
|
A:TYR232
|
3.5
|
13.0
|
1.0
|
HG
|
A:SER257
|
3.7
|
12.7
|
1.0
|
O
|
A:HOH861
|
3.9
|
35.2
|
1.0
|
CG
|
A:GLU173
|
3.9
|
9.2
|
1.0
|
HA
|
A:SER233
|
4.0
|
8.9
|
1.0
|
N
|
A:TYR232
|
4.1
|
9.7
|
1.0
|
O
|
A:HOH729
|
4.1
|
23.0
|
1.0
|
H
|
A:TYR232
|
4.1
|
11.6
|
1.0
|
HA
|
A:TYR232
|
4.2
|
13.8
|
1.0
|
O
|
A:HOH838
|
4.2
|
43.2
|
1.0
|
O
|
A:HOH682
|
4.2
|
14.2
|
1.0
|
CA
|
A:TYR232
|
4.2
|
11.5
|
1.0
|
CB
|
A:ASP231
|
4.2
|
10.5
|
1.0
|
HG3
|
A:GLU173
|
4.3
|
11.0
|
1.0
|
HG2
|
A:GLU173
|
4.3
|
11.0
|
1.0
|
C
|
A:ASP231
|
4.4
|
11.2
|
1.0
|
HG2
|
A:PRO195
|
4.4
|
16.4
|
1.0
|
N
|
A:SER233
|
4.4
|
7.4
|
1.0
|
HB3
|
A:SER257
|
4.4
|
11.3
|
1.0
|
HB3
|
A:GLU173
|
4.5
|
9.8
|
1.0
|
OG
|
A:SER257
|
4.5
|
10.6
|
1.0
|
HE2
|
A:HIS256
|
4.5
|
14.8
|
1.0
|
HB3
|
A:ASP231
|
4.6
|
12.6
|
1.0
|
HA
|
A:ASP231
|
4.7
|
10.9
|
1.0
|
CA
|
A:SER233
|
4.7
|
7.4
|
1.0
|
CA
|
A:ASP231
|
4.7
|
9.1
|
1.0
|
HH12
|
A:ARG193
|
4.7
|
21.3
|
1.0
|
CB
|
A:GLU173
|
4.7
|
8.2
|
1.0
|
O
|
A:HOH789
|
4.7
|
23.9
|
1.0
|
HD13
|
A:ILE199
|
4.7
|
13.5
|
1.0
|
HB2
|
A:SER257
|
4.8
|
11.3
|
1.0
|
CB
|
A:SER257
|
4.8
|
9.4
|
1.0
|
HB2
|
A:GLU173
|
4.8
|
9.8
|
1.0
|
HB2
|
A:ASP231
|
4.8
|
12.6
|
1.0
|
O
|
A:ASP231
|
4.9
|
10.8
|
1.0
|
HG3
|
A:PRO195
|
5.0
|
16.4
|
1.0
|
|
Zinc binding site 2 out
of 11 in 4pe3
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Zinc Binding Sites List in 4pe3
Zinc binding site 2 out
of 11 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn406
b:49.6
occ:0.70
|
NE2
|
A:HIS49
|
2.0
|
33.2
|
1.0
|
O
|
A:HOH848
|
2.1
|
36.3
|
1.0
|
O
|
A:HOH882
|
2.1
|
32.6
|
1.0
|
CE1
|
A:HIS49
|
2.9
|
36.5
|
1.0
|
HE1
|
A:HIS49
|
3.0
|
43.8
|
1.0
|
CD2
|
A:HIS49
|
3.1
|
34.3
|
1.0
|
HD2
|
A:HIS49
|
3.4
|
41.2
|
1.0
|
HD12
|
A:LEU277
|
4.0
|
40.5
|
1.0
|
HD11
|
A:LEU277
|
4.0
|
40.5
|
1.0
|
ND1
|
A:HIS49
|
4.0
|
35.3
|
1.0
|
HD23
|
A:LEU273
|
4.1
|
40.9
|
1.0
|
OE2
|
A:GLU81
|
4.2
|
42.5
|
1.0
|
CG
|
A:HIS49
|
4.2
|
33.4
|
1.0
|
CD1
|
A:LEU277
|
4.3
|
33.8
|
1.0
|
HD13
|
A:LEU277
|
4.3
|
40.5
|
1.0
|
OE1
|
A:GLU81
|
4.5
|
51.8
|
1.0
|
CD
|
A:GLU81
|
4.7
|
47.7
|
1.0
|
HA
|
A:LEU273
|
4.7
|
37.8
|
1.0
|
HD1
|
A:HIS49
|
4.8
|
42.3
|
1.0
|
HD22
|
A:LEU273
|
4.8
|
40.9
|
1.0
|
CD2
|
A:LEU273
|
4.9
|
34.1
|
1.0
|
|
Zinc binding site 3 out
of 11 in 4pe3
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Zinc Binding Sites List in 4pe3
Zinc binding site 3 out
of 11 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn407
b:10.8
occ:0.96
|
OD2
|
A:ASP240
|
2.0
|
10.5
|
1.0
|
N1
|
A:IMD402
|
2.0
|
11.4
|
1.0
|
CG
|
A:ASP240
|
2.8
|
9.4
|
1.0
|
OD1
|
A:ASP240
|
3.0
|
12.1
|
1.0
|
C2
|
A:IMD402
|
3.0
|
12.4
|
1.0
|
C5
|
A:IMD402
|
3.0
|
12.3
|
1.0
|
H2
|
A:IMD402
|
3.2
|
14.9
|
1.0
|
H5
|
A:IMD402
|
3.3
|
14.8
|
1.0
|
O
|
A:HOH533
|
3.9
|
15.4
|
1.0
|
N3
|
A:IMD402
|
4.2
|
14.8
|
1.0
|
C4
|
A:IMD402
|
4.2
|
14.0
|
1.0
|
CB
|
A:ASP240
|
4.2
|
9.3
|
1.0
|
HB3
|
A:ASP240
|
4.4
|
11.1
|
1.0
|
HB2
|
A:ASP240
|
4.5
|
11.1
|
1.0
|
|
Zinc binding site 4 out
of 11 in 4pe3
Go back to
Zinc Binding Sites List in 4pe3
Zinc binding site 4 out
of 11 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn408
b:13.0
occ:0.52
|
OD2
|
A:ASP245
|
1.9
|
16.2
|
1.0
|
HB3
|
A:ASP245
|
2.9
|
12.1
|
1.0
|
CG
|
A:ASP245
|
2.9
|
14.4
|
1.0
|
O
|
A:HOH504
|
3.0
|
25.6
|
1.0
|
CB
|
A:ASP245
|
3.2
|
10.1
|
1.0
|
HB2
|
A:ASP245
|
3.3
|
12.1
|
1.0
|
OD1
|
A:ASP245
|
4.0
|
15.9
|
1.0
|
CA
|
A:ASP245
|
4.7
|
9.7
|
1.0
|
HA2
|
A:GLY242
|
4.8
|
13.0
|
1.0
|
HA
|
A:ASP245
|
5.0
|
11.6
|
1.0
|
|
Zinc binding site 5 out
of 11 in 4pe3
Go back to
Zinc Binding Sites List in 4pe3
Zinc binding site 5 out
of 11 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn409
b:14.5
occ:0.99
|
ND1
|
A:HIS297
|
2.0
|
11.3
|
1.0
|
O
|
A:HOH541
|
2.0
|
14.0
|
1.0
|
CE1
|
A:HIS297
|
2.9
|
11.8
|
1.0
|
HE1
|
A:HIS297
|
3.1
|
14.2
|
1.0
|
HB3
|
A:HIS297
|
3.1
|
11.3
|
1.0
|
CG
|
A:HIS297
|
3.1
|
10.1
|
1.0
|
CB
|
A:HIS297
|
3.5
|
9.4
|
1.0
|
HB2
|
A:HIS297
|
3.6
|
11.3
|
1.0
|
HA
|
A:ASP294
|
3.6
|
12.5
|
1.0
|
HE21
|
A:GLN298
|
4.0
|
29.8
|
1.0
|
OD1
|
A:ASP294
|
4.0
|
18.0
|
1.0
|
NE2
|
A:HIS297
|
4.1
|
12.2
|
1.0
|
CD2
|
A:HIS297
|
4.2
|
11.0
|
1.0
|
O
|
A:HOH634
|
4.2
|
17.5
|
1.0
|
CA
|
A:ASP294
|
4.6
|
10.4
|
1.0
|
HB3
|
A:ASP294
|
4.6
|
15.3
|
1.0
|
CG
|
A:ASP294
|
4.6
|
16.3
|
1.0
|
HD11
|
A:LEU301
|
4.8
|
16.8
|
1.0
|
NE2
|
A:GLN298
|
4.8
|
24.8
|
1.0
|
O
|
A:ASP294
|
4.8
|
11.3
|
1.0
|
CB
|
A:ASP294
|
4.8
|
12.7
|
1.0
|
HE2
|
A:HIS297
|
4.8
|
14.7
|
1.0
|
HG2
|
A:GLN298
|
4.9
|
20.5
|
1.0
|
CA
|
A:HIS297
|
4.9
|
8.7
|
1.0
|
|
Zinc binding site 6 out
of 11 in 4pe3
Go back to
Zinc Binding Sites List in 4pe3
Zinc binding site 6 out
of 11 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn410
b:17.2
occ:0.41
|
OD1
|
A:ASP357
|
2.0
|
30.4
|
1.0
|
OD2
|
A:ASP357
|
2.0
|
31.7
|
1.0
|
O
|
A:HOH585
|
2.1
|
31.9
|
1.0
|
CG
|
A:ASP357
|
2.2
|
33.2
|
1.0
|
CB
|
A:ASP357
|
3.7
|
29.0
|
1.0
|
HD3
|
A:LYS358
|
3.8
|
36.7
|
1.0
|
O
|
A:ASP357
|
3.9
|
29.7
|
1.0
|
HB2
|
A:ASP357
|
4.1
|
34.8
|
1.0
|
HB3
|
A:ASP357
|
4.1
|
34.8
|
1.0
|
HE2
|
A:LYS358
|
4.2
|
38.9
|
1.0
|
O
|
A:HOH792
|
4.2
|
29.9
|
1.0
|
C
|
A:ASP357
|
4.3
|
25.7
|
1.0
|
CA
|
A:ASP357
|
4.5
|
26.2
|
1.0
|
HA
|
A:ASP357
|
4.5
|
31.5
|
1.0
|
CD
|
A:LYS358
|
4.6
|
30.6
|
1.0
|
CE
|
A:LYS358
|
4.8
|
32.4
|
1.0
|
HD2
|
A:LYS358
|
4.9
|
36.7
|
1.0
|
|
Zinc binding site 7 out
of 11 in 4pe3
Go back to
Zinc Binding Sites List in 4pe3
Zinc binding site 7 out
of 11 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn411
b:15.6
occ:0.84
|
OE1
|
A:GLU305
|
2.0
|
29.5
|
1.0
|
O
|
A:HOH534
|
2.1
|
25.0
|
1.0
|
OE2
|
A:GLU305
|
2.2
|
39.2
|
1.0
|
CD
|
A:GLU305
|
2.4
|
21.8
|
1.0
|
HA
|
A:GLU302
|
3.7
|
13.3
|
1.0
|
HG2
|
A:GLU302
|
3.9
|
18.0
|
1.0
|
O
|
A:HOH507
|
3.9
|
27.7
|
1.0
|
CG
|
A:GLU305
|
3.9
|
22.4
|
1.0
|
HB3
|
A:GLU305
|
4.2
|
22.7
|
1.0
|
HG2
|
A:GLU305
|
4.3
|
26.8
|
1.0
|
HG3
|
A:GLU305
|
4.4
|
26.8
|
1.0
|
HB2
|
A:GLU305
|
4.5
|
22.7
|
1.0
|
CB
|
A:GLU305
|
4.5
|
18.9
|
1.0
|
CA
|
A:GLU302
|
4.6
|
11.1
|
1.0
|
CG
|
A:GLU302
|
4.7
|
15.0
|
1.0
|
HG3
|
A:GLU302
|
4.8
|
18.0
|
1.0
|
O
|
A:HOH521
|
5.0
|
32.0
|
1.0
|
|
Zinc binding site 8 out
of 11 in 4pe3
Go back to
Zinc Binding Sites List in 4pe3
Zinc binding site 8 out
of 11 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn412
b:17.5
occ:0.44
|
OE2
|
A:GLU321
|
2.0
|
29.2
|
1.0
|
OE1
|
A:GLU321
|
2.1
|
45.4
|
1.0
|
O
|
A:HOH616
|
2.1
|
46.1
|
1.0
|
OE2
|
A:GLU322
|
2.2
|
21.1
|
1.0
|
CD
|
A:GLU321
|
2.3
|
34.8
|
1.0
|
HG2
|
A:GLU322
|
2.7
|
20.7
|
1.0
|
CD
|
A:GLU322
|
3.1
|
21.6
|
1.0
|
CG
|
A:GLU322
|
3.3
|
17.3
|
1.0
|
HG3
|
A:GLU322
|
3.5
|
20.7
|
1.0
|
HG22
|
A:THR183
|
3.7
|
22.7
|
1.0
|
O
|
A:HOH522
|
3.8
|
31.3
|
1.0
|
O
|
A:HOH778
|
3.8
|
42.1
|
1.0
|
CG
|
A:GLU321
|
3.9
|
28.2
|
1.0
|
HZ2
|
A:LYS325
|
3.9
|
32.5
|
1.0
|
OG
|
A:SER319
|
4.0
|
19.5
|
1.0
|
HG3
|
A:GLU321
|
4.2
|
33.8
|
1.0
|
HG2
|
A:GLU321
|
4.3
|
33.8
|
1.0
|
OE1
|
A:GLU322
|
4.3
|
18.1
|
1.0
|
HB2
|
A:GLU321
|
4.4
|
27.3
|
1.0
|
HG
|
A:SER319
|
4.4
|
23.4
|
1.0
|
HG21
|
A:THR183
|
4.5
|
22.7
|
1.0
|
CG2
|
A:THR183
|
4.5
|
18.9
|
1.0
|
O
|
A:HOH620
|
4.6
|
41.2
|
1.0
|
H
|
A:GLU322
|
4.6
|
19.9
|
1.0
|
CB
|
A:GLU322
|
4.7
|
16.1
|
1.0
|
NZ
|
A:LYS325
|
4.7
|
27.1
|
1.0
|
HZ1
|
A:LYS325
|
4.7
|
32.5
|
1.0
|
CB
|
A:GLU321
|
4.7
|
22.7
|
1.0
|
HD3
|
A:LYS325
|
4.8
|
27.1
|
1.0
|
N
|
A:GLU322
|
4.8
|
16.5
|
1.0
|
HA
|
A:GLU322
|
4.9
|
20.8
|
1.0
|
|
Zinc binding site 9 out
of 11 in 4pe3
Go back to
Zinc Binding Sites List in 4pe3
Zinc binding site 9 out
of 11 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn413
b:21.9
occ:0.47
|
ZN
|
A:ZN413
|
0.0
|
21.9
|
0.5
|
OD1
|
A:ASP186
|
2.0
|
16.0
|
1.0
|
O
|
A:HOH517
|
2.1
|
38.4
|
1.0
|
ZN
|
A:ZN413
|
2.3
|
34.9
|
0.5
|
CG
|
A:ASP186
|
3.1
|
13.3
|
1.0
|
OD2
|
A:ASP186
|
3.4
|
15.4
|
1.0
|
HG1
|
A:THR183
|
3.8
|
22.3
|
1.0
|
OG1
|
A:THR183
|
4.1
|
18.6
|
1.0
|
HA
|
A:ASP186
|
4.3
|
17.7
|
1.0
|
CB
|
A:ASP186
|
4.5
|
14.4
|
1.0
|
O
|
A:HOH595
|
4.5
|
32.1
|
1.0
|
HG23
|
A:THR183
|
4.7
|
22.7
|
1.0
|
CA
|
A:ASP186
|
4.7
|
14.7
|
1.0
|
HB2
|
A:GLU185
|
4.8
|
23.5
|
1.0
|
H
|
A:ASP186
|
4.8
|
17.4
|
1.0
|
N
|
A:ASP186
|
4.8
|
14.5
|
1.0
|
HG21
|
A:THR183
|
4.9
|
22.7
|
1.0
|
HB3
|
A:ASP186
|
4.9
|
17.3
|
1.0
|
|
Zinc binding site 10 out
of 11 in 4pe3
Go back to
Zinc Binding Sites List in 4pe3
Zinc binding site 10 out
of 11 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn413
b:34.9
occ:0.53
|
ZN
|
A:ZN413
|
0.0
|
34.9
|
0.5
|
ZN
|
A:ZN413
|
2.3
|
21.9
|
0.5
|
OD2
|
A:ASP186
|
2.3
|
15.4
|
1.0
|
O
|
A:HOH595
|
2.6
|
32.1
|
1.0
|
OD1
|
A:ASP186
|
2.7
|
16.0
|
1.0
|
CG
|
A:ASP186
|
2.9
|
13.3
|
1.0
|
HB2
|
A:ASP182
|
3.4
|
20.5
|
1.0
|
H
|
A:ASP182
|
3.5
|
16.7
|
1.0
|
HG23
|
A:THR183
|
3.8
|
22.7
|
1.0
|
H
|
A:THR183
|
4.2
|
17.5
|
1.0
|
O
|
A:HOH517
|
4.2
|
38.4
|
1.0
|
HG1
|
A:THR183
|
4.3
|
22.3
|
1.0
|
OG1
|
A:THR183
|
4.3
|
18.6
|
1.0
|
CB
|
A:ASP182
|
4.3
|
17.1
|
1.0
|
N
|
A:ASP182
|
4.3
|
13.9
|
1.0
|
CB
|
A:ASP186
|
4.4
|
14.4
|
1.0
|
CG2
|
A:THR183
|
4.6
|
18.9
|
1.0
|
OD2
|
A:ASP182
|
4.6
|
20.7
|
1.0
|
HG21
|
A:THR183
|
4.6
|
22.7
|
1.0
|
N
|
A:THR183
|
4.6
|
14.6
|
1.0
|
HB3
|
A:ASP186
|
4.7
|
17.3
|
1.0
|
O
|
A:PRO180
|
4.7
|
14.8
|
1.0
|
HB2
|
A:ASP186
|
4.7
|
17.3
|
1.0
|
HA
|
A:LEU181
|
4.8
|
12.2
|
1.0
|
CA
|
A:ASP182
|
4.8
|
15.0
|
1.0
|
HB3
|
A:ASP182
|
4.9
|
20.5
|
1.0
|
CB
|
A:THR183
|
5.0
|
18.4
|
1.0
|
|
Reference:
M.W.Vetting,
N.F.Al Obaidi,
L.L.Morisco,
S.R.Wasserman,
M.Stead,
J.D.Attonito,
A.Scott Glenn,
S.Chowdhury,
B.Evans,
B.Hillerich,
J.Love,
R.D.Seidel,
K.L.Whalen,
J.A.Gerlt,
S.C.Almo,
Enzyme Function Initiative (Efi).
Crystal Structure of A Trap Periplasmic Solute Binding Protein From Rhodobacter Sphaeroides (RSPH17029_3620, Target Efi-510199), Apo Open Structure To Be Published.
Page generated: Sun Oct 27 05:51:23 2024
|