Atomistry » Zinc » PDB 4p9d-4pof » 4pbe
Atomistry »
  Zinc »
    PDB 4p9d-4pof »
      4pbe »

Zinc in PDB 4pbe: Phosphotriesterase Variant REV6

Enzymatic activity of Phosphotriesterase Variant REV6

All present enzymatic activity of Phosphotriesterase Variant REV6:
3.1.8.1;

Protein crystallography data

The structure of Phosphotriesterase Variant REV6, PDB code: 4pbe was solved by E.Campbell, M.Kaltenbach, N.Tokuriki, C.J.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.59 / 1.51
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 85.638, 85.966, 89.188, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 24.9

Other elements in 4pbe:

The structure of Phosphotriesterase Variant REV6 also contains other interesting chemical elements:

Arsenic (As) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Phosphotriesterase Variant REV6 (pdb code 4pbe). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Phosphotriesterase Variant REV6, PDB code: 4pbe:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 4pbe

Go back to Zinc Binding Sites List in 4pbe
Zinc binding site 1 out of 4 in the Phosphotriesterase Variant REV6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Phosphotriesterase Variant REV6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2401

b:11.0
occ:1.00
O1 A:CAC2403 1.9 10.2 0.6
NE2 A:HIS57 2.1 11.2 1.0
NE2 A:HIS55 2.1 9.0 1.0
OQ1 A:KCX169 2.1 11.0 1.0
OD1 A:ASP301 2.2 11.3 1.0
CD2 A:HIS55 3.0 9.0 1.0
CE1 A:HIS57 3.0 9.0 1.0
CX A:KCX169 3.0 12.1 1.0
CG A:ASP301 3.0 10.7 1.0
CE1 A:HIS55 3.1 11.7 1.0
CD2 A:HIS57 3.1 9.6 1.0
AS A:CAC2403 3.2 26.0 0.6
OD2 A:ASP301 3.3 11.9 1.0
OQ2 A:KCX169 3.5 10.6 1.0
ZN A:ZN2402 3.5 17.2 1.0
C2 A:CAC2403 3.6 17.7 0.6
NZ A:KCX169 4.0 14.9 1.0
CG2 A:VAL101 4.1 10.5 1.0
ND1 A:HIS57 4.1 9.5 1.0
CE1 A:HIS230 4.1 14.6 1.0
CG A:HIS55 4.2 9.8 1.0
ND1 A:HIS55 4.2 10.1 1.0
CG A:HIS57 4.2 8.1 1.0
O2 A:CAC2403 4.3 12.1 0.6
NE2 A:HIS230 4.4 12.0 1.0
CB A:ASP301 4.4 11.0 1.0
C1 A:CAC2403 4.6 21.1 0.6
O A:HOH2590 4.8 23.9 1.0
CA A:ASP301 4.9 10.4 1.0

Zinc binding site 2 out of 4 in 4pbe

Go back to Zinc Binding Sites List in 4pbe
Zinc binding site 2 out of 4 in the Phosphotriesterase Variant REV6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Phosphotriesterase Variant REV6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2402

b:17.2
occ:1.00
NE2 A:HIS230 2.0 12.0 1.0
OQ2 A:KCX169 2.0 10.6 1.0
O2 A:CAC2403 2.1 12.1 0.6
O1 A:CAC2403 2.3 10.2 0.6
ND1 A:HIS201 2.5 18.1 1.0
AS A:CAC2403 2.8 26.0 0.6
CX A:KCX169 2.9 12.1 1.0
CE1 A:HIS230 2.9 14.6 1.0
CD2 A:HIS230 3.0 17.4 1.0
OQ1 A:KCX169 3.2 11.0 1.0
CE1 A:HIS201 3.4 17.1 1.0
CG A:HIS201 3.5 18.3 1.0
ZN A:ZN2401 3.5 11.0 1.0
CB A:HIS201 3.8 14.5 1.0
CE1 A:HIS55 4.0 11.7 1.0
NE1 A:TRP131 4.0 14.7 1.0
ND1 A:HIS230 4.1 17.4 1.0
NE2 A:HIS55 4.1 9.0 1.0
CG A:HIS230 4.1 14.5 1.0
NZ A:KCX169 4.1 14.9 1.0
C1 A:CAC2403 4.2 21.1 0.6
OD2 A:ASP301 4.2 11.9 1.0
C2 A:CAC2403 4.3 17.7 0.6
CA A:HIS201 4.5 14.9 1.0
NE2 A:HIS201 4.6 19.8 1.0
CE A:KCX169 4.6 13.1 1.0
CD1 A:TRP131 4.6 14.3 1.0
CD2 A:HIS201 4.7 20.3 1.0
OD1 A:ASP301 4.9 11.3 1.0
CG A:ASP301 4.9 10.7 1.0

Zinc binding site 3 out of 4 in 4pbe

Go back to Zinc Binding Sites List in 4pbe
Zinc binding site 3 out of 4 in the Phosphotriesterase Variant REV6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Phosphotriesterase Variant REV6 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn2401

b:15.2
occ:0.93
O G:HOH2644 1.8 20.5 1.0
NE2 G:HIS57 2.0 14.1 1.0
NE2 G:HIS55 2.1 13.5 1.0
OQ2 G:KCX169 2.2 17.9 1.0
OD1 G:ASP301 2.3 14.9 1.0
CE1 G:HIS57 3.0 14.3 1.0
CD2 G:HIS55 3.0 16.9 1.0
CD2 G:HIS57 3.1 14.4 1.0
CX G:KCX169 3.1 15.4 1.0
CG G:ASP301 3.1 15.4 1.0
CE1 G:HIS55 3.1 15.2 1.0
OD2 G:ASP301 3.4 17.3 1.0
ZN G:ZN2402 3.4 19.5 0.7
O2 G:MPD2403 3.5 15.3 0.9
OQ1 G:KCX169 3.5 20.9 1.0
C1 G:MPD2403 3.7 22.6 0.9
CM G:MPD2403 3.8 29.6 0.9
C2 G:MPD2403 3.9 30.7 0.9
NZ G:KCX169 4.1 19.4 1.0
ND1 G:HIS57 4.1 14.3 1.0
CE1 G:HIS230 4.1 18.8 1.0
CG G:HIS55 4.2 14.5 1.0
CG G:HIS57 4.2 18.6 1.0
ND1 G:HIS55 4.2 14.9 1.0
CG2 G:VAL101 4.2 13.1 1.0
NE2 G:HIS230 4.3 15.2 1.0
CB G:ASP301 4.4 14.0 1.0
CA G:ASP301 4.9 15.8 1.0

Zinc binding site 4 out of 4 in 4pbe

Go back to Zinc Binding Sites List in 4pbe
Zinc binding site 4 out of 4 in the Phosphotriesterase Variant REV6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Phosphotriesterase Variant REV6 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn2402

b:19.5
occ:0.73
OQ1 G:KCX169 1.9 20.9 1.0
NE2 G:HIS230 2.0 15.2 1.0
O G:HOH2644 2.3 20.5 1.0
O2 G:MPD2403 2.7 15.3 0.9
CX G:KCX169 2.8 15.4 1.0
CE1 G:HIS230 3.0 18.8 1.0
ND1 G:HIS201 3.0 19.6 1.0
OQ2 G:KCX169 3.0 17.9 1.0
CD2 G:HIS230 3.1 19.0 1.0
ZN G:ZN2401 3.4 15.2 0.9
CG G:HIS201 3.8 23.0 1.0
CB G:HIS201 3.9 23.3 1.0
CE1 G:HIS201 3.9 25.4 1.0
CE1 G:HIS55 4.0 15.2 1.0
NE2 G:HIS55 4.0 13.5 1.0
C2 G:MPD2403 4.1 30.7 0.9
NZ G:KCX169 4.1 19.4 1.0
ND1 G:HIS230 4.1 18.3 1.0
NE1 G:TRP131 4.1 16.1 1.0
CG G:HIS230 4.2 21.1 1.0
OD2 G:ASP301 4.2 17.3 1.0
C1 G:MPD2403 4.2 22.6 0.9
CE G:KCX169 4.7 20.2 1.0
CA G:HIS201 4.8 18.8 1.0
CD1 G:TRP131 4.8 16.5 1.0
OD1 G:ASP301 4.9 14.9 1.0
CM G:MPD2403 4.9 29.6 0.9
CG G:ASP301 4.9 15.4 1.0

Reference:

E.Campbell, M.Kaltenbach, N.Tokuriki, C.J.Jackson. Phosphotriesterase Variant REV6 To Be Published.
Page generated: Wed Dec 16 05:40:24 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy