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Zinc in PDB 4pa5: Tgl - A Bacterial Spore Coat Transglutaminase - Cystamine Complex

Enzymatic activity of Tgl - A Bacterial Spore Coat Transglutaminase - Cystamine Complex

All present enzymatic activity of Tgl - A Bacterial Spore Coat Transglutaminase - Cystamine Complex:
2.3.2.13;

Protein crystallography data

The structure of Tgl - A Bacterial Spore Coat Transglutaminase - Cystamine Complex, PDB code: 4pa5 was solved by J.A.Brito, D.Placido, C.G.Fernandes, D.Lousa, A.Isidro, C.M.Soares, J.Pohl, M.A.Carrondo, A.O.Henriques, M.Archer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.57 / 1.86
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 98.350, 98.350, 65.814, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 21.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Tgl - A Bacterial Spore Coat Transglutaminase - Cystamine Complex (pdb code 4pa5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Tgl - A Bacterial Spore Coat Transglutaminase - Cystamine Complex, PDB code: 4pa5:

Zinc binding site 1 out of 1 in 4pa5

Go back to Zinc Binding Sites List in 4pa5
Zinc binding site 1 out of 1 in the Tgl - A Bacterial Spore Coat Transglutaminase - Cystamine Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Tgl - A Bacterial Spore Coat Transglutaminase - Cystamine Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2005

b:80.7
occ:1.00
O A:HOH2128 3.5 51.9 1.0
NZ A:LYS93 3.7 50.4 1.0
NH1 A:ARG83 3.7 42.9 1.0
O1 A:PGE2002 3.8 56.2 1.0
NH2 A:ARG83 3.9 41.4 1.0
CE A:LYS93 3.9 49.0 1.0
CD A:LYS93 4.2 36.8 1.0
CZ A:ARG83 4.3 37.6 1.0

Reference:

C.G.Fernandes, D.Placido, D.Lousa, J.A.Brito, A.Isidro, C.M.Soares, J.Pohl, M.A.Carrondo, M.Archer, A.O.Henriques. Structural and Functional Characterization of An Ancient Bacterial Transglutaminase Sheds Light on the Minimal Requirements For Protein Cross-Linking. Biochemistry V. 54 5723 2015.
ISSN: ISSN 0006-2960
PubMed: 26322858
DOI: 10.1021/ACS.BIOCHEM.5B00661
Page generated: Wed Dec 16 05:40:23 2020

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