Atomistry » Zinc » PDB 4ojl-4ovz » 4ojz
Atomistry »
  Zinc »
    PDB 4ojl-4ovz »
      4ojz »

Zinc in PDB 4ojz: Crystal Structure of ALG17C Mutant Y258A Complexed with Alginate Trisaccharide

Protein crystallography data

The structure of Crystal Structure of ALG17C Mutant Y258A Complexed with Alginate Trisaccharide, PDB code: 4ojz was solved by S.K.Nair, D.S.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.00 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 85.820, 128.620, 88.130, 90.00, 111.81, 90.00
R / Rfree (%) 17.9 / 20.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of ALG17C Mutant Y258A Complexed with Alginate Trisaccharide (pdb code 4ojz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of ALG17C Mutant Y258A Complexed with Alginate Trisaccharide, PDB code: 4ojz:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4ojz

Go back to Zinc Binding Sites List in 4ojz
Zinc binding site 1 out of 2 in the Crystal Structure of ALG17C Mutant Y258A Complexed with Alginate Trisaccharide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of ALG17C Mutant Y258A Complexed with Alginate Trisaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:17.3
occ:1.00
O A:HOH1594 2.1 15.8 1.0
NE2 A:HIS464 2.1 11.9 1.0
O A:HOH1482 2.2 11.6 1.0
ND1 A:HIS415 2.2 14.9 1.0
OD1 A:ASP433 2.2 15.1 1.0
O A:HOH912 2.3 13.9 1.0
CE1 A:HIS415 3.0 14.7 1.0
CD2 A:HIS464 3.0 11.8 1.0
CG A:ASP433 3.1 15.1 1.0
CE1 A:HIS464 3.2 11.8 1.0
OD2 A:ASP433 3.3 15.1 1.0
CG A:HIS415 3.3 15.0 1.0
O A:HOH933 3.8 12.7 1.0
CB A:HIS415 3.8 15.7 1.0
O A:ALA458 4.0 15.5 1.0
N A:ASN310 4.0 16.3 1.0
OD2 A:ASP417 4.1 15.2 1.0
NE2 A:HIS415 4.2 14.8 1.0
CG A:HIS464 4.2 12.0 1.0
ND1 A:HIS464 4.2 11.6 1.0
O A:ASN310 4.3 17.5 1.0
N A:GLY435 4.3 13.4 1.0
CD2 A:HIS415 4.3 15.0 1.0
O A:PRO308 4.5 16.0 1.0
CA A:ASN310 4.5 17.1 1.0
CB A:ASP433 4.5 14.8 1.0
O A:GLY435 4.6 15.2 1.0
N A:TYR434 4.7 13.5 1.0
CA A:GLY435 4.7 14.3 1.0
C A:ASN310 4.8 17.7 1.0
C A:ILE309 4.9 15.9 1.0
CG A:ASP417 4.9 15.1 1.0
CA A:ILE309 4.9 15.6 1.0

Zinc binding site 2 out of 2 in 4ojz

Go back to Zinc Binding Sites List in 4ojz
Zinc binding site 2 out of 2 in the Crystal Structure of ALG17C Mutant Y258A Complexed with Alginate Trisaccharide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of ALG17C Mutant Y258A Complexed with Alginate Trisaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn801

b:15.5
occ:1.00
O B:HOH1559 2.1 16.5 1.0
O B:HOH1389 2.1 13.9 1.0
NE2 B:HIS464 2.1 10.8 1.0
ND1 B:HIS415 2.2 15.1 1.0
O B:HOH966 2.2 7.9 1.0
OD1 B:ASP433 2.2 15.2 1.0
CD2 B:HIS464 3.0 11.6 1.0
CE1 B:HIS415 3.0 15.3 1.0
CG B:ASP433 3.1 14.9 1.0
CE1 B:HIS464 3.2 11.9 1.0
CG B:HIS415 3.3 15.3 1.0
OD2 B:ASP433 3.4 14.9 1.0
CB B:HIS415 3.8 15.7 1.0
O B:HOH930 3.8 12.7 1.0
N B:ASN310 4.0 15.3 1.0
O B:ALA458 4.0 14.0 1.0
OD2 B:ASP417 4.1 17.0 1.0
NE2 B:HIS415 4.1 14.9 1.0
CG B:HIS464 4.2 11.9 1.0
N B:GLY435 4.2 13.7 1.0
O B:ASN310 4.2 18.0 1.0
ND1 B:HIS464 4.3 11.5 1.0
CD2 B:HIS415 4.3 14.9 1.0
O B:PRO308 4.4 14.4 1.0
CA B:ASN310 4.5 16.5 1.0
CB B:ASP433 4.5 14.9 1.0
N B:TYR434 4.6 13.6 1.0
O B:GLY435 4.6 14.1 1.0
CA B:GLY435 4.7 13.8 1.0
C B:ASN310 4.8 18.2 1.0
C B:ILE309 4.8 15.2 1.0
CA B:ILE309 4.8 15.1 1.0
CG B:ASP417 4.9 16.7 1.0

Reference:

D.Park, S.Jagtap, S.K.Nair. Structure of A PL17 Family Alginate Lyase Demonstrates Functional Similarities Among Exotype Depolymerases. J.Biol.Chem. V. 289 8645 2014.
ISSN: ISSN 0021-9258
PubMed: 24478312
DOI: 10.1074/JBC.M113.531111
Page generated: Wed Dec 16 05:39:11 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy