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Zinc in PDB 4oh2: Crystal Structure of Cu/Zn Superoxide Dismutase I149T

Enzymatic activity of Crystal Structure of Cu/Zn Superoxide Dismutase I149T

All present enzymatic activity of Crystal Structure of Cu/Zn Superoxide Dismutase I149T:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structure of Cu/Zn Superoxide Dismutase I149T, PDB code: 4oh2 was solved by B.R.Crane, G.E.Merz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.10 / 2.38
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 165.099, 203.811, 144.407, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 21.6

Other elements in 4oh2:

The structure of Crystal Structure of Cu/Zn Superoxide Dismutase I149T also contains other interesting chemical elements:

Copper (Cu) 10 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T (pdb code 4oh2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T, PDB code: 4oh2:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in 4oh2

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Zinc binding site 1 out of 10 in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Cu/Zn Superoxide Dismutase I149T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:28.1
occ:1.00
OD1 A:ASP83 2.0 17.6 1.0
ND1 A:HIS63 2.0 23.3 1.0
ND1 A:HIS80 2.1 20.1 1.0
ND1 A:HIS71 2.2 27.0 1.0
CG A:ASP83 2.8 18.9 1.0
HB2 A:HIS80 2.9 26.5 1.0
CE1 A:HIS80 2.9 18.3 1.0
CE1 A:HIS63 3.0 26.2 1.0
OD2 A:ASP83 3.0 25.1 1.0
CG A:HIS63 3.0 25.4 1.0
CG A:HIS80 3.0 23.2 1.0
HE1 A:HIS80 3.1 22.0 1.0
HE1 A:HIS63 3.2 31.5 1.0
CE1 A:HIS71 3.2 23.2 1.0
HA A:HIS71 3.2 26.8 1.0
HB2 A:HIS71 3.2 26.7 1.0
HB3 A:HIS63 3.2 20.4 1.0
HB2 A:HIS63 3.3 20.4 1.0
CG A:HIS71 3.3 23.3 1.0
HE1 A:HIS71 3.3 27.9 1.0
CB A:HIS63 3.4 17.0 1.0
CB A:HIS80 3.5 22.1 1.0
CB A:HIS71 3.6 22.3 1.0
O A:LYS136 3.9 28.9 1.0
CA A:HIS71 3.9 22.3 1.0
HB3 A:HIS80 3.9 26.5 1.0
NE2 A:HIS80 4.0 21.3 1.0
H A:HIS80 4.1 26.4 1.0
NE2 A:HIS63 4.1 24.2 1.0
CD2 A:HIS80 4.1 24.0 1.0
H A:GLY72 4.1 34.4 1.0
CD2 A:HIS63 4.2 23.4 1.0
CB A:ASP83 4.2 25.6 1.0
HA A:ASP83 4.3 22.0 1.0
NE2 A:HIS71 4.3 28.0 1.0
CD2 A:HIS71 4.4 25.2 1.0
HA A:THR137 4.5 36.9 1.0
HB3 A:HIS71 4.5 26.7 1.0
HB3 A:ASP83 4.6 30.7 1.0
N A:GLY72 4.7 28.6 1.0
CA A:ASP83 4.7 18.4 1.0
CA A:HIS80 4.7 22.2 1.0
N A:HIS80 4.7 22.0 1.0
HE2 A:HIS80 4.8 25.6 1.0
C A:HIS71 4.8 23.7 1.0
HB2 A:ASP83 4.8 30.7 1.0
HE2 A:HIS63 4.9 29.0 1.0
C A:LYS136 4.9 30.0 1.0
N A:HIS71 4.9 25.0 1.0
HD2 A:HIS46 4.9 28.6 1.0
CA A:HIS63 4.9 22.4 1.0
HB3 A:HIS46 5.0 18.3 1.0
CD2 A:HIS46 5.0 23.8 1.0
HD2 A:HIS80 5.0 28.8 1.0
N A:ASP83 5.0 23.5 1.0

Zinc binding site 2 out of 10 in 4oh2

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Zinc binding site 2 out of 10 in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Cu/Zn Superoxide Dismutase I149T within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn202

b:21.7
occ:1.00
OD1 B:ASP83 1.9 15.2 1.0
ND1 B:HIS80 2.1 17.4 1.0
ND1 B:HIS71 2.1 17.1 1.0
ND1 B:HIS63 2.1 16.2 1.0
CG B:ASP83 2.7 14.8 1.0
OD2 B:ASP83 2.8 18.0 1.0
HB2 B:HIS80 2.9 28.2 1.0
CE1 B:HIS71 2.9 15.0 1.0
CE1 B:HIS80 3.0 14.2 1.0
HE1 B:HIS71 3.0 18.0 1.0
CG B:HIS80 3.1 16.5 1.0
CE1 B:HIS63 3.1 18.3 1.0
CG B:HIS63 3.1 15.6 1.0
HE1 B:HIS80 3.1 17.1 1.0
HB2 B:HIS63 3.2 14.5 1.0
CG B:HIS71 3.2 16.9 1.0
HB3 B:HIS63 3.3 14.5 1.0
HE1 B:HIS63 3.3 21.9 1.0
HA B:HIS71 3.3 25.8 1.0
HB2 B:HIS71 3.4 18.6 1.0
CB B:HIS63 3.4 12.1 1.0
CB B:HIS80 3.5 23.5 1.0
CB B:HIS71 3.7 15.5 1.0
H B:HIS80 3.9 24.7 1.0
O B:LYS136 3.9 25.7 1.0
HB3 B:HIS80 4.0 28.2 1.0
CA B:HIS71 4.0 21.5 1.0
H B:GLY72 4.0 28.5 1.0
NE2 B:HIS80 4.1 17.7 1.0
NE2 B:HIS71 4.1 17.5 1.0
CB B:ASP83 4.1 17.9 1.0
CD2 B:HIS80 4.2 23.1 1.0
NE2 B:HIS63 4.2 18.9 1.0
HA B:ASP83 4.2 17.5 1.0
CD2 B:HIS63 4.2 18.4 1.0
CD2 B:HIS71 4.3 15.8 1.0
HA B:THR137 4.5 23.9 1.0
HB3 B:ASP83 4.6 21.4 1.0
HB3 B:HIS71 4.6 18.6 1.0
CA B:ASP83 4.6 14.6 1.0
HD2 B:HIS46 4.6 25.9 1.0
N B:HIS80 4.7 20.6 1.0
N B:GLY72 4.7 23.8 1.0
HB2 B:ASP83 4.7 21.4 1.0
CA B:HIS80 4.7 15.8 1.0
CD2 B:HIS46 4.8 21.6 1.0
HE2 B:HIS80 4.9 21.3 1.0
HE2 B:HIS71 4.9 21.0 1.0
C B:LYS136 4.9 27.1 1.0
N B:ASP83 4.9 20.9 1.0
C B:HIS71 4.9 19.6 1.0
HB3 B:HIS46 4.9 18.5 1.0
CA B:HIS63 5.0 17.9 1.0
HE2 B:HIS63 5.0 22.7 1.0

Zinc binding site 3 out of 10 in 4oh2

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Zinc binding site 3 out of 10 in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Cu/Zn Superoxide Dismutase I149T within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn202

b:42.9
occ:1.00
OD1 C:ASP83 2.1 34.4 1.0
ND1 C:HIS80 2.2 38.8 1.0
ND1 C:HIS63 2.2 28.0 1.0
ND1 C:HIS71 2.4 43.5 1.0
HB2 C:HIS80 2.8 40.9 1.0
CG C:ASP83 2.9 49.6 1.0
OD2 C:ASP83 3.1 49.8 1.0
CG C:HIS80 3.1 40.2 1.0
CG C:HIS63 3.1 26.3 1.0
CE1 C:HIS80 3.1 42.6 1.0
HB3 C:HIS63 3.2 32.1 1.0
HB2 C:HIS71 3.2 63.1 1.0
CE1 C:HIS63 3.2 36.9 1.0
HB2 C:HIS63 3.2 32.1 1.0
CE1 C:HIS71 3.3 42.5 1.0
HE1 C:HIS80 3.3 51.1 1.0
CG C:HIS71 3.4 48.3 1.0
HA C:HIS71 3.4 59.8 1.0
CB C:HIS63 3.4 26.7 1.0
HE1 C:HIS63 3.4 44.3 1.0
CB C:HIS80 3.4 34.0 1.0
HE1 C:HIS71 3.5 50.9 1.0
CB C:HIS71 3.6 52.6 1.0
HB3 C:HIS80 3.9 40.9 1.0
H C:HIS80 3.9 54.7 1.0
CA C:HIS71 4.0 49.8 1.0
O C:LYS136 4.1 57.5 1.0
NE2 C:HIS80 4.2 50.7 1.0
CD2 C:HIS80 4.2 50.8 1.0
H C:GLY72 4.3 63.3 1.0
CD2 C:HIS63 4.3 41.6 1.0
NE2 C:HIS63 4.3 39.7 1.0
CB C:ASP83 4.4 43.1 1.0
NE2 C:HIS71 4.4 51.5 1.0
HA C:THR137 4.4 66.5 1.0
CD2 C:HIS71 4.5 57.7 1.0
HA C:ASP83 4.5 41.5 1.0
HB3 C:HIS71 4.5 63.1 1.0
CA C:HIS80 4.6 38.6 1.0
N C:HIS80 4.6 45.6 1.0
HB3 C:ASP83 4.8 51.7 1.0
N C:GLY72 4.8 52.8 1.0
CA C:ASP83 4.9 34.6 1.0
CA C:HIS63 4.9 27.0 1.0
HD2 C:HIS46 4.9 44.1 1.0
O C:HOH313 4.9 34.0 1.0
HB2 C:ASP83 5.0 51.7 1.0
C C:HIS71 5.0 53.4 1.0
C C:LYS136 5.0 63.6 1.0
O C:GLY72 5.0 49.8 1.0
HE2 C:HIS80 5.0 60.9 1.0

Zinc binding site 4 out of 10 in 4oh2

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Zinc binding site 4 out of 10 in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Cu/Zn Superoxide Dismutase I149T within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn202

b:21.7
occ:1.00
ND1 D:HIS80 2.0 18.7 1.0
OD1 D:ASP83 2.0 15.8 1.0
ND1 D:HIS63 2.1 18.0 1.0
ND1 D:HIS71 2.1 16.1 1.0
CG D:ASP83 2.8 15.7 1.0
CE1 D:HIS80 2.9 17.8 1.0
HB2 D:HIS80 2.9 16.8 1.0
CE1 D:HIS71 2.9 19.6 1.0
OD2 D:ASP83 2.9 17.6 1.0
HE1 D:HIS71 3.0 23.6 1.0
CE1 D:HIS63 3.0 16.5 1.0
CG D:HIS80 3.0 15.5 1.0
HE1 D:HIS80 3.0 21.4 1.0
CG D:HIS63 3.1 18.3 1.0
HE1 D:HIS63 3.1 19.8 1.0
CG D:HIS71 3.2 15.0 1.0
HB3 D:HIS63 3.2 20.4 1.0
HA D:HIS71 3.3 21.5 1.0
HB2 D:HIS63 3.4 20.4 1.0
HB2 D:HIS71 3.4 17.1 1.0
CB D:HIS63 3.5 17.0 1.0
CB D:HIS80 3.5 14.0 1.0
CB D:HIS71 3.7 14.2 1.0
H D:HIS80 3.8 23.9 1.0
CA D:HIS71 4.0 17.9 1.0
NE2 D:HIS80 4.0 17.2 1.0
H D:GLY72 4.0 24.9 1.0
O D:LYS136 4.0 24.8 1.0
HB3 D:HIS80 4.0 16.8 1.0
CD2 D:HIS80 4.1 15.7 1.0
NE2 D:HIS71 4.1 15.2 1.0
NE2 D:HIS63 4.1 18.8 1.0
CB D:ASP83 4.2 19.5 1.0
CD2 D:HIS63 4.2 19.6 1.0
HA D:ASP83 4.2 16.6 1.0
CD2 D:HIS71 4.3 16.6 1.0
HB3 D:ASP83 4.5 23.4 1.0
N D:HIS80 4.5 19.9 1.0
HA D:THR137 4.6 23.5 1.0
CA D:HIS80 4.6 11.3 1.0
N D:GLY72 4.6 20.7 1.0
CA D:ASP83 4.6 13.8 1.0
HB3 D:HIS71 4.6 17.1 1.0
HD2 D:HIS46 4.7 20.4 1.0
HE2 D:HIS80 4.7 20.7 1.0
HB2 D:ASP83 4.8 23.4 1.0
C D:HIS71 4.8 19.6 1.0
CD2 D:HIS46 4.8 17.0 1.0
HE2 D:HIS71 4.8 18.3 1.0
N D:ASP83 4.9 16.5 1.0
O D:HOH325 4.9 25.5 1.0
H D:ASP83 4.9 19.8 1.0
HE2 D:HIS63 4.9 22.6 1.0
HD2 D:HIS80 4.9 18.9 1.0
HB3 D:HIS46 4.9 17.5 1.0
O D:GLY72 4.9 19.5 1.0
C D:LYS136 4.9 22.1 1.0
CA D:HIS63 5.0 22.7 1.0

Zinc binding site 5 out of 10 in 4oh2

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Zinc binding site 5 out of 10 in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Cu/Zn Superoxide Dismutase I149T within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn202

b:42.9
occ:1.00
ND1 E:HIS80 1.8 32.1 1.0
OD1 E:ASP83 2.0 36.8 1.0
HD2 E:HIS63 2.3 59.7 1.0
ND1 E:HIS71 2.4 40.6 1.0
CD2 E:HIS63 2.6 49.8 1.0
CE1 E:HIS80 2.7 30.0 1.0
HB2 E:HIS80 2.8 45.4 1.0
CG E:ASP83 2.8 39.1 1.0
CG E:HIS80 2.8 43.6 1.0
HE1 E:HIS80 2.9 36.0 1.0
OD2 E:ASP83 3.0 37.4 1.0
CG E:HIS63 3.0 40.5 1.0
HA E:HIS71 3.1 47.4 1.0
HB2 E:HIS63 3.1 40.5 1.0
HB3 E:HIS63 3.1 40.5 1.0
HB2 E:HIS71 3.2 37.5 1.0
CB E:HIS63 3.3 33.7 1.0
CB E:HIS80 3.3 37.8 1.0
CG E:HIS71 3.3 29.5 1.0
CE1 E:HIS71 3.4 41.4 1.0
HE1 E:HIS71 3.5 49.7 1.0
NE2 E:HIS63 3.5 46.8 1.0
CB E:HIS71 3.6 31.2 1.0
CA E:HIS71 3.8 39.5 1.0
HB3 E:HIS80 3.8 45.4 1.0
NE2 E:HIS80 3.8 44.7 1.0
H E:HIS80 3.9 62.1 1.0
CD2 E:HIS80 3.9 42.1 1.0
HE2 E:HIS63 3.9 56.2 1.0
ND1 E:HIS63 4.0 50.5 1.0
H E:GLY72 4.0 56.0 1.0
O E:LYS136 4.0 50.8 1.0
CB E:ASP83 4.2 32.7 1.0
CE1 E:HIS63 4.3 53.3 1.0
HD2 E:HIS46 4.3 49.0 1.0
HA E:ASP83 4.3 30.7 1.0
NE2 E:HIS71 4.5 47.6 1.0
CD2 E:HIS71 4.5 44.0 1.0
HB3 E:HIS71 4.5 37.5 1.0
O E:HOH340 4.5 35.5 1.0
HA E:THR137 4.5 50.7 1.0
CA E:HIS80 4.5 36.6 1.0
N E:HIS80 4.5 51.8 1.0
HB3 E:ASP83 4.6 39.3 1.0
HE2 E:HIS80 4.6 53.6 1.0
H E:ASP83 4.6 49.9 1.0
HD1 E:HIS63 4.6 60.6 1.0
CA E:ASP83 4.6 25.6 1.0
CD2 E:HIS46 4.6 40.8 1.0
N E:GLY72 4.7 46.7 1.0
N E:ASP83 4.7 41.6 1.0
N E:HIS71 4.7 43.0 1.0
HB2 E:ASP83 4.7 39.3 1.0
HD2 E:HIS80 4.8 50.5 1.0
C E:HIS71 4.8 43.2 1.0
CA E:HIS63 4.8 38.2 1.0
H E:HIS71 5.0 51.5 1.0
C E:LYS136 5.0 51.2 1.0
HB3 E:HIS46 5.0 30.1 1.0

Zinc binding site 6 out of 10 in 4oh2

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Zinc binding site 6 out of 10 in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Cu/Zn Superoxide Dismutase I149T within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn202

b:22.4
occ:1.00
OD1 F:ASP83 1.9 17.2 1.0
ND1 F:HIS63 2.0 25.6 1.0
ND1 F:HIS71 2.1 18.8 1.0
ND1 F:HIS80 2.1 17.8 1.0
CG F:ASP83 2.7 19.6 1.0
OD2 F:ASP83 2.8 22.2 1.0
CE1 F:HIS71 2.9 18.2 1.0
HE1 F:HIS71 2.9 21.9 1.0
HB2 F:HIS80 2.9 18.7 1.0
CE1 F:HIS80 2.9 17.8 1.0
CE1 F:HIS63 3.0 22.0 1.0
CG F:HIS63 3.1 22.9 1.0
HE1 F:HIS80 3.1 21.4 1.0
CG F:HIS80 3.1 16.5 1.0
HE1 F:HIS63 3.1 26.4 1.0
CG F:HIS71 3.2 15.5 1.0
HB2 F:HIS63 3.3 21.0 1.0
HB3 F:HIS63 3.3 21.0 1.0
HA F:HIS71 3.3 25.1 1.0
HB2 F:HIS71 3.4 23.5 1.0
CB F:HIS63 3.4 17.5 1.0
CB F:HIS80 3.5 15.6 1.0
CB F:HIS71 3.7 19.6 1.0
O F:LYS136 3.9 23.0 1.0
H F:HIS80 3.9 21.8 1.0
CA F:HIS71 4.0 20.9 1.0
H F:GLY72 4.1 26.2 1.0
HB3 F:HIS80 4.1 18.7 1.0
NE2 F:HIS71 4.1 17.0 1.0
NE2 F:HIS80 4.1 24.2 1.0
NE2 F:HIS63 4.1 16.4 1.0
CB F:ASP83 4.2 20.3 1.0
CD2 F:HIS80 4.2 21.9 1.0
CD2 F:HIS63 4.2 29.6 1.0
CD2 F:HIS71 4.2 18.1 1.0
HA F:ASP83 4.3 22.5 1.0
HA F:THR137 4.5 29.8 1.0
HB3 F:ASP83 4.5 24.4 1.0
N F:HIS80 4.6 18.1 1.0
HB3 F:HIS71 4.6 23.5 1.0
CA F:HIS80 4.7 18.9 1.0
CA F:ASP83 4.7 18.7 1.0
N F:GLY72 4.7 21.8 1.0
HB2 F:ASP83 4.7 24.4 1.0
HD2 F:HIS46 4.7 23.6 1.0
O F:HOH325 4.8 32.8 1.0
HE2 F:HIS71 4.8 20.4 1.0
HE2 F:HIS80 4.8 29.1 1.0
C F:LYS136 4.8 20.9 1.0
HE2 F:HIS63 4.9 19.7 1.0
CD2 F:HIS46 4.9 19.7 1.0
C F:HIS71 4.9 18.3 1.0
N F:ASP83 4.9 23.6 1.0
CA F:HIS63 5.0 19.4 1.0
N F:HIS71 5.0 24.8 1.0
H F:ASP83 5.0 28.3 1.0

Zinc binding site 7 out of 10 in 4oh2

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Zinc binding site 7 out of 10 in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Cu/Zn Superoxide Dismutase I149T within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn202

b:66.0
occ:1.00
OD1 G:ASP83 2.1 58.2 1.0
ND1 G:HIS80 2.3 65.0 1.0
ND1 G:HIS71 2.4 61.4 1.0
ND1 G:HIS63 2.7 50.9 1.0
HB2 G:HIS80 2.9 74.8 1.0
CG G:ASP83 2.9 67.1 1.0
CG G:HIS63 3.0 46.4 1.0
OD2 G:ASP83 3.1 64.8 1.0
HB3 G:HIS63 3.1 43.2 1.0
CG G:HIS80 3.2 64.9 1.0
CE1 G:HIS80 3.2 60.2 1.0
HB2 G:HIS63 3.2 43.2 1.0
HB2 G:HIS71 3.3 78.8 1.0
CE1 G:HIS71 3.3 57.0 1.0
CB G:HIS63 3.3 36.0 1.0
HE1 G:HIS71 3.4 68.4 1.0
CE1 G:HIS63 3.4 45.1 1.0
CG G:HIS71 3.4 64.1 1.0
HE1 G:HIS80 3.4 72.3 1.0
HA G:HIS71 3.5 79.9 1.0
CB G:HIS80 3.5 62.3 1.0
CB G:HIS71 3.7 65.7 1.0
HE1 G:HIS63 3.8 54.1 1.0
CD2 G:HIS63 3.9 54.0 1.0
O G:LYS136 3.9 73.8 1.0
HB3 G:HIS80 4.0 74.8 1.0
NE2 G:HIS63 4.0 55.2 1.0
H G:HIS80 4.1 80.4 1.0
CA G:HIS71 4.1 66.6 1.0
NE2 G:HIS80 4.2 75.5 1.0
H G:GLY72 4.2 64.6 1.0
CD2 G:HIS80 4.3 71.2 1.0
CB G:ASP83 4.4 58.4 1.0
NE2 G:HIS71 4.4 68.2 1.0
CD2 G:HIS71 4.5 65.1 1.0
HD2 G:HIS63 4.6 64.8 1.0
HA G:ASP83 4.6 55.7 1.0
HB3 G:HIS71 4.6 78.8 1.0
HE2 G:HIS63 4.7 66.3 1.0
CA G:HIS80 4.8 65.5 1.0
N G:HIS80 4.8 67.0 1.0
HB3 G:ASP83 4.8 70.1 1.0
HA G:THR137 4.9 83.5 1.0
CA G:HIS63 4.9 40.8 1.0
H G:ASP83 4.9 64.6 1.0
N G:GLY72 4.9 53.9 1.0
CA G:ASP83 4.9 46.4 1.0
N G:ASP83 5.0 53.8 1.0
HB2 G:ASP83 5.0 70.1 1.0
HE2 G:HIS80 5.0 90.5 1.0

Zinc binding site 8 out of 10 in 4oh2

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Zinc binding site 8 out of 10 in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Cu/Zn Superoxide Dismutase I149T within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn202

b:27.9
occ:1.00
OD1 H:ASP83 1.9 18.8 1.0
ND1 H:HIS63 2.0 30.1 1.0
ND1 H:HIS80 2.0 27.4 1.0
ND1 H:HIS71 2.0 21.5 1.0
CG H:ASP83 2.7 28.6 1.0
HB2 H:HIS80 2.9 38.9 1.0
CE1 H:HIS80 2.9 24.8 1.0
OD2 H:ASP83 2.9 27.4 1.0
CE1 H:HIS71 2.9 24.1 1.0
CE1 H:HIS63 2.9 24.3 1.0
CG H:HIS80 3.0 26.6 1.0
HE1 H:HIS71 3.0 28.9 1.0
CG H:HIS63 3.0 21.2 1.0
HE1 H:HIS80 3.1 29.8 1.0
HE1 H:HIS63 3.1 29.1 1.0
CG H:HIS71 3.1 24.6 1.0
HB2 H:HIS71 3.2 24.7 1.0
HB3 H:HIS63 3.2 24.8 1.0
HA H:HIS71 3.3 27.3 1.0
HB2 H:HIS63 3.3 24.8 1.0
CB H:HIS80 3.4 32.4 1.0
CB H:HIS63 3.4 20.7 1.0
CB H:HIS71 3.5 20.6 1.0
H H:HIS80 3.9 36.4 1.0
HB3 H:HIS80 3.9 38.9 1.0
NE2 H:HIS80 3.9 27.2 1.0
CA H:HIS71 3.9 22.8 1.0
O H:LYS136 4.0 24.1 1.0
CD2 H:HIS80 4.0 23.9 1.0
H H:GLY72 4.0 28.8 1.0
NE2 H:HIS63 4.1 26.5 1.0
NE2 H:HIS71 4.1 26.1 1.0
CD2 H:HIS63 4.1 24.1 1.0
CB H:ASP83 4.2 26.3 1.0
CD2 H:HIS71 4.2 22.0 1.0
HA H:ASP83 4.3 31.2 1.0
HA H:THR137 4.4 32.9 1.0
HB3 H:HIS71 4.5 24.7 1.0
HB3 H:ASP83 4.5 31.6 1.0
N H:HIS80 4.6 30.3 1.0
CA H:HIS80 4.6 21.2 1.0
N H:GLY72 4.6 24.0 1.0
CA H:ASP83 4.7 26.0 1.0
HE2 H:HIS80 4.7 32.7 1.0
HB2 H:ASP83 4.7 31.6 1.0
HD2 H:HIS46 4.8 28.0 1.0
C H:HIS71 4.8 24.6 1.0
HE2 H:HIS63 4.8 31.8 1.0
HE2 H:HIS71 4.8 31.3 1.0
HD2 H:HIS80 4.8 28.7 1.0
N H:ASP83 4.8 24.7 1.0
H H:ASP83 4.9 29.6 1.0
C H:LYS136 4.9 27.5 1.0
CD2 H:HIS46 4.9 23.3 1.0
CA H:HIS63 4.9 22.7 1.0
O H:HOH306 4.9 28.9 1.0
HD2 H:HIS63 5.0 29.0 1.0

Zinc binding site 9 out of 10 in 4oh2

Go back to Zinc Binding Sites List in 4oh2
Zinc binding site 9 out of 10 in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of Cu/Zn Superoxide Dismutase I149T within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn202

b:53.4
occ:1.00
OD1 I:ASP83 1.9 56.5 1.0
ND1 I:HIS63 2.2 44.6 1.0
ND1 I:HIS80 2.2 47.1 1.0
ND1 I:HIS71 2.5 63.2 1.0
HB2 I:HIS80 2.7 57.4 1.0
CG I:ASP83 2.8 53.3 1.0
OD2 I:ASP83 2.9 55.5 1.0
CG I:HIS80 3.1 48.5 1.0
HE1 I:HIS71 3.1 74.9 1.0
CG I:HIS63 3.1 47.9 1.0
HB3 I:HIS63 3.1 47.8 1.0
CE1 I:HIS71 3.1 62.4 1.0
CE1 I:HIS80 3.2 34.3 1.0
HB2 I:HIS63 3.2 47.8 1.0
CE1 I:HIS63 3.2 50.1 1.0
CB I:HIS80 3.3 47.8 1.0
CB I:HIS63 3.4 39.8 1.0
HA I:HIS71 3.4 74.0 1.0
HE1 I:HIS80 3.4 41.2 1.0
HE1 I:HIS63 3.4 60.1 1.0
CG I:HIS71 3.6 65.0 1.0
HB3 I:HIS80 3.8 57.4 1.0
H I:HIS80 3.8 65.7 1.0
HB2 I:HIS71 3.9 73.3 1.0
H I:GLY72 4.1 77.2 1.0
CB I:HIS71 4.1 61.1 1.0
O I:LYS136 4.1 52.4 1.0
CA I:HIS71 4.2 61.7 1.0
CB I:ASP83 4.2 51.5 1.0
CD2 I:HIS80 4.2 56.3 1.0
NE2 I:HIS80 4.2 56.3 1.0
CD2 I:HIS63 4.3 46.1 1.0
HA I:ASP83 4.3 59.5 1.0
NE2 I:HIS63 4.3 46.0 1.0
NE2 I:HIS71 4.3 60.0 1.0
N I:HIS80 4.5 54.8 1.0
CA I:HIS80 4.5 53.8 1.0
HB3 I:ASP83 4.5 61.8 1.0
CD2 I:HIS71 4.6 64.0 1.0
HA I:THR137 4.6 72.9 1.0
CA I:ASP83 4.7 49.6 1.0
HB2 I:ASP83 4.8 61.8 1.0
N I:GLY72 4.8 64.3 1.0
HD2 I:HIS46 4.8 60.4 1.0
CA I:HIS63 4.9 56.5 1.0
N I:ASP83 4.9 51.4 1.0
CD2 I:HIS46 5.0 50.3 1.0
HB3 I:HIS46 5.0 46.0 1.0
HE2 I:HIS80 5.0 67.5 1.0

Zinc binding site 10 out of 10 in 4oh2

Go back to Zinc Binding Sites List in 4oh2
Zinc binding site 10 out of 10 in the Crystal Structure of Cu/Zn Superoxide Dismutase I149T


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of Cu/Zn Superoxide Dismutase I149T within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn202

b:31.5
occ:1.00
OD1 J:ASP83 1.9 28.0 1.0
ND1 J:HIS80 2.1 27.3 1.0
ND1 J:HIS71 2.2 30.8 1.0
ND1 J:HIS63 2.2 33.2 1.0
CG J:ASP83 2.7 25.3 1.0
OD2 J:ASP83 2.9 25.5 1.0
HB2 J:HIS80 2.9 31.3 1.0
CE1 J:HIS80 3.0 20.7 1.0
CE1 J:HIS71 3.0 25.0 1.0
HE1 J:HIS71 3.1 30.0 1.0
CG J:HIS80 3.1 28.2 1.0
HE1 J:HIS80 3.1 24.9 1.0
CG J:HIS63 3.1 30.4 1.0
CE1 J:HIS63 3.2 27.1 1.0
HB3 J:HIS63 3.2 28.7 1.0
HB2 J:HIS63 3.3 28.7 1.0
CG J:HIS71 3.3 26.3 1.0
HA J:HIS71 3.3 31.8 1.0
HE1 J:HIS63 3.3 32.6 1.0
HB2 J:HIS71 3.4 28.3 1.0
CB J:HIS63 3.4 23.9 1.0
CB J:HIS80 3.5 26.1 1.0
CB J:HIS71 3.7 23.6 1.0
O J:LYS136 3.9 26.1 1.0
CA J:HIS71 4.0 26.5 1.0
HB3 J:HIS80 4.0 31.3 1.0
H J:HIS80 4.0 45.5 1.0
NE2 J:HIS80 4.1 29.2 1.0
CB J:ASP83 4.1 29.8 1.0
CD2 J:HIS80 4.2 29.6 1.0
NE2 J:HIS71 4.2 24.2 1.0
HA J:ASP83 4.2 40.1 1.0
NE2 J:HIS63 4.3 35.9 1.0
CD2 J:HIS63 4.3 30.9 1.0
H J:GLY72 4.3 34.5 1.0
CD2 J:HIS71 4.3 21.1 1.0
HA J:THR137 4.5 37.2 1.0
HB3 J:ASP83 4.5 35.7 1.0
CA J:ASP83 4.6 33.4 1.0
HB3 J:HIS71 4.6 28.3 1.0
HD2 J:HIS46 4.7 33.5 1.0
HB2 J:ASP83 4.7 35.7 1.0
N J:HIS80 4.7 37.9 1.0
CA J:HIS80 4.7 32.9 1.0
CD2 J:HIS46 4.8 27.9 1.0
N J:ASP83 4.8 32.8 1.0
HE2 J:HIS80 4.9 35.1 1.0
H J:ASP83 4.9 39.3 1.0
N J:GLY72 4.9 28.8 1.0
C J:LYS136 4.9 34.0 1.0
HE2 J:HIS71 4.9 29.1 1.0
HB3 J:HIS46 4.9 34.6 1.0
C J:HIS71 5.0 30.9 1.0
O J:HOH315 5.0 29.2 1.0
CA J:HIS63 5.0 35.0 1.0
N J:HIS71 5.0 34.2 1.0

Reference:

G.E.Merz, P.P.Borbat, A.J.Pratt, E.D.Getzoff, J.H.Freed, B.R.Crane. Copper-Based Pulsed Dipolar Esr Spectroscopy As A Probe of Protein Conformation Linked to Disease States. Biophys.J. V. 107 1669 2014.
ISSN: ISSN 0006-3495
PubMed: 25296320
DOI: 10.1016/J.BPJ.2014.07.068
Page generated: Wed Dec 16 05:38:42 2020

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