Zinc in PDB 4o8x: Zinc-Bound RPN11 in Complex with RPN8

The structure of Zinc-Bound RPN11 in Complex with RPN8, PDB code: 4o8x was solved by E.J.Worden, C.Padovani, A.Martin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.23 / 1.99
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	70.296, 70.296, 198.912, 90.00, 90.00, 90.00
R / Rfree (%)	16.1 / 19.5

The binding sites of Zinc atom in the Zinc-Bound RPN11 in Complex with RPN8 (pdb code 4o8x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Zinc-Bound RPN11 in Complex with RPN8, PDB code: 4o8x:

Zinc binding site 1 out of 1 in the Zinc-Bound RPN11 in Complex with RPN8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zinc-Bound RPN11 in Complex with RPN8 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn315 b:34.7 occ:0.40 OD2 B:ASP122 1.7 30.2 1.0 O B:HOH492 2.0 41.5 1.0 NE2 B:HIS109 2.1 32.5 1.0 NE2 B:HIS111 2.1 28.2 1.0 CG B:ASP122 2.4 26.9 1.0 OD1 B:ASP122 2.5 29.4 1.0 CD2 B:HIS109 2.9 29.7 1.0 HD2 B:HIS109 3.0 35.6 1.0 CE1 B:HIS111 3.1 29.6 1.0 CD2 B:HIS111 3.1 26.3 1.0 CE1 B:HIS109 3.2 30.2 1.0 HE1 B:HIS111 3.2 35.5 1.0 HD2 B:HIS111 3.3 31.6 1.0 HE1 B:HIS109 3.4 36.2 1.0 H B:SER119 3.6 34.8 1.0 CB B:ASP122 3.8 26.0 1.0 HG B:SER119 3.9 42.8 1.0 OG B:SER119 4.0 35.6 1.0 HB3 B:ASP122 4.1 31.2 1.0 CG B:HIS109 4.1 29.3 1.0 HB2 B:ASP122 4.1 31.2 1.0 ND1 B:HIS111 4.2 25.5 1.0 HB3 B:SER119 4.2 40.8 1.0 ND1 B:HIS109 4.2 30.3 1.0 HA B:LEU118 4.2 29.1 1.0 CG B:HIS111 4.2 25.4 1.0 OE1 B:GLU48 4.2 39.8 1.0 O B:TRP117 4.4 25.4 1.0 N B:SER119 4.4 29.0 1.0 CB B:SER119 4.6 34.0 1.0 HE2 B:PHE114 4.6 34.4 1.0 H B:ASP122 4.8 33.2 1.0 HA B:ASP122 4.8 33.1 1.0 CA B:ASP122 4.9 27.6 1.0 HH2 B:TRP107 4.9 31.1 1.0 HD23 B:LEU118 5.0 28.8 1.0 HG13 B:VAL140 5.0 26.1 1.0 HG22 B:VAL140 5.0 29.0 1.0

E.J.Worden, C.Padovani, A.Martin. Structure of the RPN11-RPN8 Dimer Reveals Mechanisms of Substrate Deubiquitination During Proteasomal Degradation. Nat.Struct.Mol.Biol. V. 21 220 2014.
ISSN: ISSN 1545-9993
PubMed: 24463465
DOI: 10.1038/NSMB.2771