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Zinc in PDB 4nuo: Crystal Structure of Zinc-Bound Na-Asp-2

Protein crystallography data

The structure of Crystal Structure of Zinc-Bound Na-Asp-2, PDB code: 4nuo was solved by A.Hofmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.90 / 1.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 37.051, 51.477, 43.139, 90.00, 93.37, 90.00
R / Rfree (%) 16.4 / 18.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Zinc-Bound Na-Asp-2 (pdb code 4nuo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Zinc-Bound Na-Asp-2, PDB code: 4nuo:

Zinc binding site 1 out of 1 in 4nuo

Go back to Zinc Binding Sites List in 4nuo
Zinc binding site 1 out of 1 in the Crystal Structure of Zinc-Bound Na-Asp-2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Zinc-Bound Na-Asp-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:17.5
occ:1.00
NE2 A:HIS88 2.2 15.4 1.0
NE2 A:HIS148 2.3 16.7 1.0
O A:HOH424 2.5 19.5 1.0
O A:HOH475 2.5 32.2 1.0
O A:HOH472 2.7 26.0 1.0
CD2 A:HIS88 3.0 14.7 1.0
CD2 A:HIS148 3.2 13.9 1.0
CE1 A:HIS88 3.3 12.4 1.0
CE1 A:HIS148 3.3 19.4 1.0
CG A:HIS88 4.2 13.1 1.0
ND1 A:HIS88 4.3 12.9 1.0
CG A:HIS148 4.3 12.0 1.0
O A:HOH511 4.4 24.9 1.0
ND1 A:HIS148 4.4 19.2 1.0
CG1 A:ILE101 4.6 10.7 1.0
O A:HOH512 4.7 21.1 1.0
CD1 A:ILE101 5.0 13.7 1.0
O A:GLU99 5.0 9.5 1.0

Reference:

L.Mason, L.Tribolet, A.Simon, N.Von Gnielinski, L.Nienaber, P.Taylor, C.Willis, M.K.Jones, P.W.Sternberg, R.B.Gasser, A.Loukas, A.Hofmann. Probing the Equatorial Groove of the Hookworm Protein and Vaccine Candidate Antigen, Na-Asp-2. Int.J.Biochem.Cell Biol. V. 50 146 2014.
ISSN: ISSN 1357-2725
PubMed: 24631931
DOI: 10.1016/J.BIOCEL.2014.03.003
Page generated: Wed Dec 16 05:37:43 2020

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