Zinc in PDB 4ntl: Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution

The structure of Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution, PDB code: 4ntl was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.01 / 1.80
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	97.161, 97.161, 144.686, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 21.3

The structure of Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Zinc atom in the Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution (pdb code 4ntl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution, PDB code: 4ntl:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in the Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:21.1 occ:0.50 OE2 A:GLU41 1.9 22.3 1.0 OD2 A:ASP45 2.1 19.2 1.0 CG A:ASP45 2.7 16.5 1.0 OD1 A:ASP45 2.7 18.9 1.0 CD A:GLU41 2.8 23.4 1.0 CG A:GLU41 3.1 23.8 1.0 O A:HOH489 3.9 30.0 1.0 OE1 A:GLU41 4.0 23.9 1.0 O A:HOH434 4.1 23.4 1.0 CB A:ASP45 4.2 17.1 1.0 O A:GLU41 4.6 22.0 1.0 CB A:GLU41 4.6 23.3 1.0 O A:HOH414 4.9 21.2 1.0

Zinc binding site 2 out of 5 in the Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:69.0 occ:1.00 OE2 A:GLU53 2.3 56.3 1.0 O A:HOH680 2.4 47.2 1.0 OE1 A:GLU53 2.9 42.2 1.0 CD A:GLU53 2.9 53.9 1.0 CE A:LYS57 4.0 79.3 1.0 NZ A:LYS57 4.2 87.8 1.0 O2 A:EDO306 4.3 46.2 1.0 CG A:GLU53 4.4 43.3 1.0

Zinc binding site 3 out of 5 in the Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:23.4 occ:1.00 OD1 A:ASP74 1.7 19.5 1.0 ND1 A:HIS78 2.1 22.7 1.0 OE1 A:GLU80 2.2 25.5 1.0 CG A:ASP74 2.7 24.1 1.0 CD A:GLU80 2.9 40.6 1.0 OE2 A:GLU80 3.0 50.5 1.0 CE1 A:HIS78 3.0 28.7 1.0 OD2 A:ASP74 3.1 22.9 1.0 CG A:HIS78 3.1 23.1 1.0 CB A:HIS78 3.5 23.8 1.0 O A:ASP74 3.7 20.4 1.0 C A:ASP74 4.0 18.7 1.0 CB A:ASP74 4.1 21.6 1.0 NE2 A:HIS78 4.2 25.8 1.0 CD2 A:HIS78 4.2 24.8 1.0 CG A:GLU80 4.4 42.7 1.0 O A:HOH460 4.5 32.7 1.0 CA A:ASP74 4.6 17.7 1.0 N A:ALA75 4.6 18.3 1.0 CA A:ALA75 4.7 19.1 1.0 CA A:HIS78 4.9 21.9 1.0

Zinc binding site 4 out of 5 in the Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn304 b:23.6 occ:1.00 O A:HOH672 1.8 26.4 1.0 ND1 A:HIS227 2.0 19.0 1.0 O A:ACT310 2.1 30.4 1.0 OXT A:ACT310 2.6 64.1 1.0 C A:ACT310 2.6 47.5 1.0 CE1 A:HIS227 2.9 18.9 1.0 CG A:HIS227 3.1 17.9 1.0 CB A:HIS227 3.5 16.4 1.0 CH3 A:ACT310 4.0 38.2 1.0 O A:HOH528 4.1 34.0 1.0 NE2 A:HIS227 4.1 17.8 1.0 CA A:HIS227 4.1 16.7 1.0 O A:HOH448 4.2 21.1 1.0 CD2 A:HIS227 4.2 16.6 1.0 CE2 A:PHE163 4.3 19.3 1.0 O A:HOH640 4.5 42.9 1.0 CD2 A:PHE163 4.9 20.6 1.0

Zinc binding site 5 out of 5 in the Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Lipoprotein, Yaec Family (EF3198) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn305 b:26.3 occ:1.00 OXT A:PHE272 2.1 29.1 1.0 C A:PHE272 3.0 32.2 1.0 CA A:PHE272 3.5 26.8 1.0 CB A:PHE272 4.0 21.1 1.0 O A:PHE272 4.1 27.6 1.0 CD1 A:PHE272 4.6 18.1 1.0 CG A:PHE272 4.8 18.4 1.0 N A:PHE272 4.9 21.9 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.