Atomistry » Zinc » PDB 4ngn-4ntk » 4nl8
Atomistry »
  Zinc »
    PDB 4ngn-4ntk »
      4nl8 »

Zinc in PDB 4nl8: Pria Helicase Bound to Ssb C-Terminal Tail Peptide

Protein crystallography data

The structure of Pria Helicase Bound to Ssb C-Terminal Tail Peptide, PDB code: 4nl8 was solved by B.Bhattacharyya, N.P.George, T.M.Thurmes, J.L.Keck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 4.08
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 106.610, 153.248, 192.373, 90.00, 90.00, 90.00
R / Rfree (%) 24 / 29.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Pria Helicase Bound to Ssb C-Terminal Tail Peptide (pdb code 4nl8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Pria Helicase Bound to Ssb C-Terminal Tail Peptide, PDB code: 4nl8:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 4nl8

Go back to Zinc Binding Sites List in 4nl8
Zinc binding site 1 out of 6 in the Pria Helicase Bound to Ssb C-Terminal Tail Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pria Helicase Bound to Ssb C-Terminal Tail Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:0.3
occ:1.00
SG A:CYS435 2.3 95.5 1.0
SG A:CYS438 2.3 0.4 1.0
SG A:CYS475 2.3 0.0 1.0
SG A:CYS478 2.3 0.4 1.0
CB A:CYS438 3.1 0.5 1.0
CB A:CYS475 3.2 0.5 1.0
CB A:CYS435 3.3 0.2 1.0
CB A:CYS478 3.4 0.9 1.0
N A:CYS478 3.5 0.4 1.0
N A:CYS438 3.9 0.0 1.0
CA A:CYS478 4.0 0.0 1.0
CA A:CYS438 4.0 0.3 1.0
N A:GLY479 4.5 0.4 1.0
C A:CYS478 4.5 0.1 1.0
C A:SER477 4.5 0.2 1.0
CB A:SER480 4.5 0.7 1.0
N A:SER480 4.6 0.6 1.0
CB A:TRP440 4.6 96.7 1.0
C A:CYS438 4.7 0.8 1.0
CB A:SER477 4.7 0.9 1.0
CA A:CYS475 4.7 0.9 1.0
CA A:CYS435 4.7 98.5 1.0
N A:SER477 4.9 0.6 1.0
CA A:SER477 4.9 0.7 1.0
N A:GLY439 4.9 0.1 1.0
N A:TRP440 5.0 0.0 1.0

Zinc binding site 2 out of 6 in 4nl8

Go back to Zinc Binding Sites List in 4nl8
Zinc binding site 2 out of 6 in the Pria Helicase Bound to Ssb C-Terminal Tail Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Pria Helicase Bound to Ssb C-Terminal Tail Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn802

b:0.0
occ:1.00
SG A:CYS465 2.3 0.5 1.0
SG A:CYS444 2.3 0.7 1.0
SG A:CYS462 2.3 0.5 1.0
SG A:CYS447 2.4 0.8 1.0
CB A:CYS444 3.2 0.5 1.0
CB A:CYS462 3.3 0.9 1.0
CB A:CYS447 3.3 0.7 1.0
CB A:CYS465 3.4 0.9 1.0
N A:CYS447 3.7 0.6 1.0
N A:CYS465 3.7 0.4 1.0
O A:CYS447 3.8 0.1 1.0
CA A:CYS447 4.0 0.0 1.0
CA A:CYS465 4.0 1.0 1.0
OG A:SER467 4.2 0.8 1.0
C A:CYS447 4.3 0.7 1.0
C A:CYS465 4.5 0.7 1.0
CA A:CYS444 4.7 0.1 1.0
CA A:CYS462 4.8 1.0 1.0
O A:CYS465 4.8 0.5 1.0
C A:HIS464 4.8 1.0 1.0
CB A:SER449 4.9 0.0 1.0
CB A:ARG446 4.9 0.9 1.0
C A:ARG446 4.9 0.9 1.0

Zinc binding site 3 out of 6 in 4nl8

Go back to Zinc Binding Sites List in 4nl8
Zinc binding site 3 out of 6 in the Pria Helicase Bound to Ssb C-Terminal Tail Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Pria Helicase Bound to Ssb C-Terminal Tail Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn801

b:0.2
occ:1.00
SG B:CYS435 2.3 0.8 1.0
SG B:CYS438 2.3 93.5 1.0
SG B:CYS475 2.3 0.1 1.0
SG B:CYS478 2.3 0.9 1.0
CB B:CYS438 3.1 0.8 1.0
CB B:CYS475 3.2 98.4 1.0
CB B:CYS435 3.2 0.2 1.0
CB B:CYS478 3.4 0.0 1.0
N B:CYS478 3.6 0.5 1.0
N B:CYS438 3.9 0.8 1.0
CA B:CYS478 4.0 0.4 1.0
CA B:CYS438 4.0 0.7 1.0
CB B:SER480 4.5 1.0 1.0
N B:GLY479 4.5 0.1 1.0
C B:CYS478 4.5 0.7 1.0
C B:SER477 4.5 0.4 1.0
N B:SER480 4.6 0.5 1.0
CB B:TRP440 4.6 0.9 1.0
C B:CYS438 4.7 0.1 1.0
CA B:CYS475 4.7 98.5 1.0
CA B:CYS435 4.7 0.2 1.0
CB B:SER477 4.7 0.3 1.0
N B:GLY439 4.9 0.6 1.0
N B:SER477 4.9 99.2 1.0
CA B:SER477 4.9 0.5 1.0
N B:TRP440 5.0 0.1 1.0

Zinc binding site 4 out of 6 in 4nl8

Go back to Zinc Binding Sites List in 4nl8
Zinc binding site 4 out of 6 in the Pria Helicase Bound to Ssb C-Terminal Tail Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Pria Helicase Bound to Ssb C-Terminal Tail Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn802

b:0.1
occ:1.00
SG B:CYS447 2.3 0.9 1.0
SG B:CYS462 2.3 0.7 1.0
SG B:CYS444 2.3 0.8 1.0
SG B:CYS465 2.4 0.5 1.0
CB B:CYS444 3.2 0.8 1.0
CB B:CYS465 3.4 0.3 1.0
CB B:CYS462 3.4 1.0 1.0
CB B:CYS447 3.5 0.3 1.0
N B:CYS465 3.7 0.9 1.0
N B:CYS447 3.7 0.7 1.0
O B:CYS447 3.9 0.0 1.0
CA B:CYS465 4.0 0.8 1.0
CA B:CYS447 4.1 0.8 1.0
C B:CYS447 4.4 0.2 1.0
OG B:SER467 4.4 0.2 1.0
C B:CYS465 4.5 0.7 1.0
CB B:SER449 4.6 0.5 1.0
CA B:CYS444 4.7 0.8 1.0
C B:HIS464 4.7 0.2 1.0
O B:CYS465 4.8 1.0 1.0
CA B:CYS462 4.9 0.3 1.0
OG B:SER449 4.9 0.6 1.0
CB B:ARG446 4.9 0.5 1.0
C B:ARG446 4.9 0.8 1.0

Zinc binding site 5 out of 6 in 4nl8

Go back to Zinc Binding Sites List in 4nl8
Zinc binding site 5 out of 6 in the Pria Helicase Bound to Ssb C-Terminal Tail Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Pria Helicase Bound to Ssb C-Terminal Tail Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn801

b:0.6
occ:1.00
SG E:CYS462 2.3 0.8 1.0
SG E:CYS444 2.3 0.4 1.0
SG E:CYS447 2.3 0.9 1.0
SG E:CYS465 2.4 0.9 1.0
CB E:CYS465 3.3 0.6 1.0
CB E:CYS462 3.5 0.4 1.0
CB E:CYS444 3.5 0.3 1.0
N E:CYS465 3.5 0.4 1.0
CB E:CYS447 3.7 0.6 1.0
N E:CYS447 3.9 0.5 1.0
CA E:CYS465 3.9 0.1 1.0
O E:CYS447 4.0 0.5 1.0
CA E:CYS447 4.2 0.2 1.0
CB E:SER449 4.4 0.1 1.0
C E:CYS465 4.5 0.2 1.0
C E:CYS447 4.5 0.8 1.0
O E:CYS444 4.5 95.9 1.0
C E:HIS464 4.6 0.6 1.0
OG E:SER467 4.6 98.7 1.0
CB E:ARG446 4.7 0.1 1.0
O E:CYS465 4.8 0.4 1.0
CA E:CYS444 4.8 0.9 1.0
OG E:SER449 4.8 0.7 1.0
CA E:CYS462 4.9 0.6 1.0
CB E:HIS464 4.9 0.5 1.0
C E:CYS444 4.9 0.8 1.0

Zinc binding site 6 out of 6 in 4nl8

Go back to Zinc Binding Sites List in 4nl8
Zinc binding site 6 out of 6 in the Pria Helicase Bound to Ssb C-Terminal Tail Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Pria Helicase Bound to Ssb C-Terminal Tail Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn802

b:0.7
occ:1.00
SG E:CYS435 2.3 1.0 1.0
SG E:CYS438 2.3 85.9 1.0
SG E:CYS478 2.3 0.1 1.0
SG E:CYS475 2.3 0.0 1.0
CB E:CYS438 3.1 89.3 1.0
CB E:CYS475 3.2 0.5 1.0
CB E:CYS435 3.3 0.6 1.0
CB E:CYS478 3.4 0.2 1.0
N E:CYS478 3.6 0.9 1.0
N E:CYS438 3.9 84.6 1.0
CA E:CYS478 4.0 0.1 1.0
CA E:CYS438 4.0 91.4 1.0
N E:GLY479 4.5 0.4 1.0
CB E:SER480 4.5 0.0 1.0
C E:CYS478 4.5 0.7 1.0
N E:SER480 4.5 0.5 1.0
C E:SER477 4.5 0.3 1.0
CB E:TRP440 4.6 0.6 1.0
C E:CYS438 4.6 96.1 1.0
CA E:CYS475 4.7 0.7 1.0
CA E:CYS435 4.7 0.4 1.0
CB E:SER477 4.7 0.5 1.0
N E:GLY439 4.9 93.6 1.0
N E:SER477 4.9 0.1 1.0
CA E:SER477 4.9 0.4 1.0
N E:TRP440 5.0 0.5 1.0

Reference:

B.Bhattacharyya, N.P.George, T.M.Thurmes, R.Zhou, N.Jani, S.R.Wessel, S.J.Sandler, T.Ha, J.L.Keck. Structural Mechanisms of Pria-Mediated Dna Replication Restart. Proc.Natl.Acad.Sci.Usa V. 111 1373 2014.
ISSN: ISSN 0027-8424
PubMed: 24379377
DOI: 10.1073/PNAS.1318001111
Page generated: Wed Dec 16 05:37:20 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy