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Zinc in PDB 4mo1: Crystal Structure of Antitermination Protein Q From Bacteriophage Lambda. Northeast Structural Genomics Consortium Target OR18A.

Protein crystallography data

The structure of Crystal Structure of Antitermination Protein Q From Bacteriophage Lambda. Northeast Structural Genomics Consortium Target OR18A., PDB code: 4mo1 was solved by S.Vorobiev, M.Su, B.Nickels, J.Seetharaman, S.Sahdev, R.Xiao, S.Kogan, M.Maglaqui, D.Wang, J.K.Everett, T.B.Acton, R.H.Ebright, G.T.Montelione, J.Hunt, L.Tong, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.35 / 2.10
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 54.474, 54.474, 109.852, 90.00, 90.00, 120.00
R / Rfree (%) 21.4 / 24.9

Other elements in 4mo1:

The structure of Crystal Structure of Antitermination Protein Q From Bacteriophage Lambda. Northeast Structural Genomics Consortium Target OR18A. also contains other interesting chemical elements:

Bromine (Br) 3 atoms
Chlorine (Cl) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Antitermination Protein Q From Bacteriophage Lambda. Northeast Structural Genomics Consortium Target OR18A. (pdb code 4mo1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Antitermination Protein Q From Bacteriophage Lambda. Northeast Structural Genomics Consortium Target OR18A., PDB code: 4mo1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4mo1

Go back to Zinc Binding Sites List in 4mo1
Zinc binding site 1 out of 2 in the Crystal Structure of Antitermination Protein Q From Bacteriophage Lambda. Northeast Structural Genomics Consortium Target OR18A.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Antitermination Protein Q From Bacteriophage Lambda. Northeast Structural Genomics Consortium Target OR18A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:42.6
occ:1.00
SG A:CYS147 2.4 42.0 1.0
SG A:CYS121 2.5 35.7 1.0
SG A:CYS118 2.5 43.0 1.0
SG A:CYS144 2.6 45.8 1.0
CB A:CYS118 3.0 40.5 1.0
CB A:CYS144 3.2 34.5 1.0
CB A:CYS147 3.2 43.9 1.0
CB A:CYS121 3.4 21.3 1.0
N A:CYS147 3.7 42.3 1.0
N A:CYS121 3.9 28.8 1.0
CA A:CYS147 4.0 43.0 1.0
CA A:CYS121 4.2 33.5 1.0
CA A:GLY125 4.3 44.9 1.0
CB A:ARG146 4.5 51.2 1.0
CA A:CYS118 4.5 44.0 1.0
CA A:CYS144 4.6 39.7 1.0
CB A:ASP120 4.6 58.8 1.0
C A:ARG146 4.7 53.1 1.0
N A:GLY125 4.7 32.4 1.0
O A:CYS144 4.7 42.6 1.0
N A:GLY151 4.8 37.4 1.0
CA A:GLY151 4.8 41.9 1.0
C A:CYS144 4.8 50.6 1.0
C A:CYS147 4.8 35.9 1.0
C A:GLY125 4.9 41.5 1.0
C A:ASP120 4.9 40.9 1.0
CA A:ARG146 5.0 45.8 1.0
N A:ASP120 5.0 50.9 1.0

Zinc binding site 2 out of 2 in 4mo1

Go back to Zinc Binding Sites List in 4mo1
Zinc binding site 2 out of 2 in the Crystal Structure of Antitermination Protein Q From Bacteriophage Lambda. Northeast Structural Genomics Consortium Target OR18A.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Antitermination Protein Q From Bacteriophage Lambda. Northeast Structural Genomics Consortium Target OR18A. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:31.9
occ:1.00
SG B:CYS147 2.4 34.5 1.0
SG B:CYS121 2.4 31.3 1.0
SG B:CYS144 2.4 29.5 1.0
SG B:CYS118 2.4 33.1 1.0
CB B:CYS118 3.0 25.3 1.0
CB B:CYS144 3.2 22.0 1.0
CB B:CYS121 3.3 26.4 1.0
CB B:CYS147 3.4 24.9 1.0
N B:CYS121 3.7 23.6 1.0
N B:CYS147 3.9 32.9 1.0
CA B:CYS121 4.1 22.6 1.0
CA B:CYS147 4.2 29.3 1.0
CB B:ASP120 4.4 35.3 1.0
CA B:CYS118 4.5 20.9 1.0
CA B:GLY125 4.5 45.8 1.0
CA B:CYS144 4.5 34.9 1.0
CA B:GLY151 4.6 24.4 1.0
C B:ASP120 4.7 34.8 1.0
CB B:ARG146 4.7 41.0 1.0
O B:CYS144 4.7 31.5 1.0
C B:CYS144 4.8 28.4 1.0
N B:GLY151 4.8 29.8 1.0
C B:ARG146 4.8 38.2 1.0
N B:GLY125 4.8 44.3 1.0
N B:ASP120 4.9 24.0 1.0
CA B:ASP120 4.9 31.8 1.0
C B:CYS118 4.9 30.7 1.0
N B:ARG146 4.9 41.8 1.0
C B:CYS121 5.0 27.4 1.0
C B:GLY125 5.0 37.6 1.0

Reference:

S.Vorobiev, M.Su, B.Nickels, J.Seetharaman, S.Sahdev, R.Xiao, S.Kogan, M.Maglaqui, D.Wang, J.K.Everett, T.B.Acton, R.H.Ebright, G.T.Montelione, J.Hunt, L.Tong. Crystal Structure of Antitermination Protein Q From Bacteriophage Lambda. To Be Published.
Page generated: Wed Dec 16 05:35:38 2020

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