Zinc in PDB 4l3k: Crystal Structure of Sporosarcina Pasteurii Uree Bound to NI2+ and ZN2+

The structure of Crystal Structure of Sporosarcina Pasteurii Uree Bound to NI2+ and ZN2+, PDB code: 4l3k was solved by B.Zambelli, K.Banaszak, A.Merloni, A.Kiliszek, W.R.Rypniewski, S.Ciurli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.66 / 1.88
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	91.329, 91.329, 82.792, 90.00, 90.00, 120.00
R / Rfree (%)	17.1 / 20.7

The structure of Crystal Structure of Sporosarcina Pasteurii Uree Bound to NI2+ and ZN2+ also contains other interesting chemical elements:

Nickel

(Ni)

1 atom

The binding sites of Zinc atom in the Crystal Structure of Sporosarcina Pasteurii Uree Bound to NI2+ and ZN2+ (pdb code 4l3k). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Sporosarcina Pasteurii Uree Bound to NI2+ and ZN2+, PDB code: 4l3k:

Zinc binding site 1 out of 1 in the Crystal Structure of Sporosarcina Pasteurii Uree Bound to NI2+ and ZN2+


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Sporosarcina Pasteurii Uree Bound to NI2+ and ZN2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:23.1 occ:1.00 OD1 A:ASP12 1.9 26.1 1.0 ND1 A:HIS9 2.0 24.5 1.0 CG A:ASP12 2.9 26.4 1.0 CG A:HIS9 3.0 22.7 1.0 OD2 A:ASP12 3.1 37.7 1.0 CE1 A:HIS9 3.1 21.2 1.0 CB A:HIS9 3.3 18.1 1.0 CD2 A:HIS9 4.2 24.4 1.0 NE2 A:HIS9 4.2 22.6 1.0 N A:ASP12 4.3 22.2 1.0 CB A:ASP12 4.3 26.0 1.0 CB A:ASP11 4.4 30.1 1.0 O A:HIS9 4.6 21.4 1.0 CA A:ASP12 4.6 22.5 1.0 CA A:HIS9 4.7 21.4 1.0 C A:HIS9 4.9 20.5 1.0 C A:ASP11 4.9 30.0 1.0

B.Zambelli, K.Banaszak, A.Merloni, A.Kiliszek, W.Rypniewski, S.Ciurli. Selectivity of Ni(II) and Zn(II) Binding to Sporosarcina Pasteurii Uree, A Metallochaperone in the Urease Assembly: A Calorimetric and Crystallographic Study. J.Biol.Inorg.Chem. V. 18 1005 2013.
ISSN: ISSN 0949-8257
PubMed: 24126709
DOI: 10.1007/S00775-013-1049-6