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Zinc in PDB 4jjj: The Structure of T. Fusca GH48 D224N Mutant

Enzymatic activity of The Structure of T. Fusca GH48 D224N Mutant

All present enzymatic activity of The Structure of T. Fusca GH48 D224N Mutant:
3.2.1.91;

Protein crystallography data

The structure of The Structure of T. Fusca GH48 D224N Mutant, PDB code: 4jjj was solved by P.M.Alahuhta, V.V.Lunin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.458, 88.494, 66.753, 90.00, 113.72, 90.00
R / Rfree (%) 12.1 / 16.4

Other elements in 4jjj:

The structure of The Structure of T. Fusca GH48 D224N Mutant also contains other interesting chemical elements:

Iron (Fe) 5 atoms
Calcium (Ca) 4 atoms
Sodium (Na) 3 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Zinc atom in the The Structure of T. Fusca GH48 D224N Mutant (pdb code 4jjj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 22 binding sites of Zinc where determined in the The Structure of T. Fusca GH48 D224N Mutant, PDB code: 4jjj:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 22 in 4jjj

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Zinc binding site 1 out of 22 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn715

b:7.6
occ:1.00
OE2 A:GLU11 1.9 6.1 1.0
OD2 A:ASP15 2.0 8.0 1.0
CD A:GLU11 2.9 6.7 1.0
CG A:ASP15 3.0 8.9 1.0
OE1 A:GLU11 3.1 6.6 1.0
CB A:ASP15 3.5 7.5 1.0
OD1 A:ASP15 4.0 8.4 1.0
CG A:GLU11 4.2 6.4 1.0
O A:HOH833 4.6 10.9 1.0
CA A:ASP15 4.7 7.8 1.0
O A:HOH1217 4.8 12.4 0.5
O A:GLU11 4.8 6.0 1.0

Zinc binding site 2 out of 22 in 4jjj

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Zinc binding site 2 out of 22 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn716

b:16.6
occ:1.00
NE2 A:HIS603 2.0 12.0 1.0
ZN A:ZN730 2.1 28.6 0.6
O A:HOH1936 2.1 29.1 0.6
OXT A:ACT736 2.3 38.9 1.0
ZN A:ZN730 2.4 26.0 0.4
O A:ACT736 2.4 41.7 1.0
C A:ACT736 2.6 34.3 1.0
CE1 A:HIS603 2.9 10.4 1.0
ZN A:ZN735 3.0 33.3 0.4
CD2 A:HIS603 3.0 10.7 1.0
O A:HOH1886 3.6 39.5 1.0
CH3 A:ACT736 3.9 42.2 1.0
ND1 A:HIS603 4.1 12.2 1.0
CG A:HIS603 4.1 10.2 1.0
O A:HOH1921 4.4 11.5 0.4
CB A:ALA612 4.4 16.0 1.0
O A:HOH1411 4.5 30.9 1.0
CD2 A:LEU604 4.8 11.3 1.0
CB A:PRO607 4.8 14.0 1.0

Zinc binding site 3 out of 22 in 4jjj

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Zinc binding site 3 out of 22 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn717

b:13.5
occ:0.50
OE2 A:GLU246 1.2 8.4 0.5
OE2 A:GLU340 1.6 17.3 0.5
ZN A:ZN727 2.1 56.3 0.5
O A:HOH1364 2.1 16.2 0.5
CD A:GLU246 2.1 11.0 0.5
CE1 A:HIS237 2.1 9.0 0.5
NE2 A:HIS237 2.2 10.3 0.5
OE2 A:GLU340 2.2 14.2 0.5
OE1 A:GLU246 2.3 14.6 0.5
NE2 A:HIS237 2.5 9.7 0.5
O A:HOH1887 2.6 21.0 0.5
CD A:GLU340 2.8 18.6 0.5
CD A:GLU340 3.0 13.4 0.5
O A:HOH1364 3.0 20.0 0.5
CD2 A:HIS237 3.1 10.7 0.5
CE1 A:HIS237 3.2 10.1 0.5
OE1 A:GLU340 3.4 19.4 0.5
ND1 A:HIS237 3.4 11.4 0.5
CG A:GLU340 3.5 12.3 0.5
CG A:GLU246 3.6 13.2 0.5
CD2 A:HIS237 3.8 9.3 0.5
OE1 A:GLU340 3.9 10.0 0.5
CD A:LYS241 3.9 23.1 0.5
CG A:GLU340 4.0 16.5 0.5
CG A:HIS237 4.2 10.2 0.5
CG A:HIS237 4.3 9.5 0.5
ND1 A:HIS237 4.3 10.6 0.5
O A:HOH1577 4.3 18.2 0.5
CD A:LYS241 4.5 15.6 0.5
CG A:GLU246 4.7 16.1 0.5
CB A:GLU246 4.7 14.1 0.5
CB A:GLU340 4.7 11.9 0.5
CB A:GLU246 4.7 12.0 0.5
CG A:LYS241 4.8 18.8 0.5
CE A:LYS241 4.9 26.5 0.5
NZ A:LYS241 4.9 30.1 0.5
O A:HOH1770 4.9 31.2 0.5
OE2 A:GLU246 5.0 17.6 0.5

Zinc binding site 4 out of 22 in 4jjj

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Zinc binding site 4 out of 22 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn718

b:16.6
occ:1.00
OE2 A:GLU526 1.9 13.8 1.0
NE2 A:HIS633 2.0 13.1 1.0
O A:HOH1922 2.1 29.0 1.0
O A:ACT737 2.1 36.2 1.0
OXT A:ACT737 2.2 29.4 1.0
C A:ACT737 2.4 25.1 1.0
CD A:GLU526 2.6 14.3 1.0
OE1 A:GLU526 2.7 15.0 1.0
CE1 A:HIS633 2.9 12.6 1.0
CD2 A:HIS633 3.0 12.1 1.0
O A:HOH1889 3.8 46.5 1.0
O A:HOH1563 3.8 30.5 1.0
CH3 A:ACT737 3.9 34.0 1.0
ND1 A:HIS633 4.0 13.6 1.0
O A:HOH1050 4.1 19.7 1.0
CG A:GLU526 4.1 14.3 1.0
CG A:HIS633 4.1 9.8 1.0
CE2 A:TYR2 4.7 17.2 1.0
O A:HOH1014 4.8 14.0 1.0
CD2 A:TYR2 4.9 15.7 1.0

Zinc binding site 5 out of 22 in 4jjj

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Zinc binding site 5 out of 22 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn719

b:8.8
occ:1.00
OE2 A:GLU361 2.0 8.1 1.0
OD1 A:ASP357 2.0 4.5 0.3
OD1 A:ASP357 2.0 9.2 0.7
O A:HOH803 2.1 8.9 1.0
CG A:ASP357 2.7 4.9 0.3
CG A:ASP357 2.7 9.4 0.7
OD2 A:ASP357 2.8 4.8 0.3
OD2 A:ASP357 2.9 11.6 0.7
CD A:GLU361 3.0 8.5 1.0
O A:HOH820 3.4 9.1 1.0
CG A:GLU361 3.4 7.0 1.0
O A:HOH1190 3.7 18.3 1.0
O A:ASP357 4.1 5.5 0.3
O A:HOH957 4.1 17.5 1.0
OE1 A:GLU361 4.1 8.8 1.0
CB A:ASP357 4.2 5.1 0.3
CB A:ASP357 4.2 7.9 0.7
O A:ASP357 4.4 5.9 0.7
O A:HOH1332 4.5 29.5 1.0
C A:ASP357 4.5 5.5 0.3
C A:ASP357 4.7 6.3 0.7
CA A:ASP357 4.8 5.4 0.3
CA A:ASP357 4.8 7.2 0.7
CB A:GLU361 4.9 6.1 1.0

Zinc binding site 6 out of 22 in 4jjj

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Zinc binding site 6 out of 22 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn720

b:17.0
occ:0.50
ZN A:ZN721 1.4 22.9 0.5
O A:HOH1130 2.1 21.0 1.0
O A:HOH1359 2.2 10.3 0.5
O A:HOH1649 2.3 17.2 0.5
O A:HOH1162 2.3 29.5 1.0
O A:HOH1794 2.4 17.6 0.5
O A:HOH1793 2.4 21.5 0.5
O A:HOH1526 3.0 16.4 0.5
OE1 A:GLU248 3.8 17.4 1.0
O A:HOH1792 3.9 38.8 1.0
O A:HOH1750 4.0 15.8 0.5
O A:GLY68 4.0 10.7 1.0
O A:HOH1101 4.0 24.8 1.0
OE2 A:GLU248 4.3 20.5 1.0
OD1 A:ASP69 4.3 9.7 1.0
O A:HOH1526 4.3 21.0 0.5
CD A:GLU248 4.4 19.4 1.0
CA A:ASP69 4.4 8.6 1.0
N A:TRP70 4.8 8.1 1.0
NZ A:LYS245 4.9 16.1 1.0
C A:GLY68 4.9 10.7 1.0
CG A:ASP69 5.0 9.4 1.0
CB A:ASP69 5.0 9.0 1.0

Zinc binding site 7 out of 22 in 4jjj

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Zinc binding site 7 out of 22 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn721

b:22.9
occ:0.50
ZN A:ZN720 1.4 17.0 0.5
O A:HOH1793 1.9 21.5 0.5
O A:HOH1794 1.9 17.6 0.5
O A:HOH1130 1.9 21.0 1.0
O A:HOH1162 2.2 29.5 1.0
O A:HOH1792 2.5 38.8 1.0
O A:HOH1359 3.1 10.3 0.5
O A:HOH1649 3.6 17.2 0.5
NZ A:LYS245 4.0 16.1 1.0
OE2 A:GLU248 4.1 20.5 1.0
O A:GLY68 4.1 10.7 1.0
O A:HOH1101 4.2 24.8 1.0
O A:HOH1526 4.2 16.4 0.5
OE1 A:GLU248 4.3 17.4 1.0
O A:HOH1366 4.4 27.3 1.0
CE A:LYS245 4.4 15.5 1.0
CD A:GLU248 4.6 19.4 1.0

Zinc binding site 8 out of 22 in 4jjj

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Zinc binding site 8 out of 22 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn722

b:18.7
occ:0.30
NE2 A:HIS535 2.0 8.6 0.3
CE1 A:HIS535 2.0 10.1 0.7
O A:HOH1295 2.1 14.0 0.7
O A:HOH1295 2.1 16.7 0.3
O A:HOH1312 2.2 18.6 1.0
OE1 A:GLN461 2.5 33.1 1.0
O A:GLN461 2.5 11.8 1.0
CD2 A:HIS535 2.7 8.7 0.3
NE2 A:HIS535 3.0 11.1 0.7
ND1 A:HIS535 3.0 10.6 0.7
CE1 A:HIS535 3.2 8.8 0.3
ZN A:ZN723 3.4 13.5 0.7
C A:GLN461 3.5 13.2 1.0
CD A:GLN461 3.6 28.4 1.0
ZN A:ZN725 3.7 17.5 0.7
O A:HOH1715 3.8 16.5 0.3
CA A:GLN461 3.9 14.8 1.0
O A:HOH1784 4.0 28.4 0.7
CG A:HIS535 4.0 8.9 0.3
CD2 A:HIS535 4.1 9.4 0.7
ND1 A:HIS535 4.2 8.5 0.3
CG A:HIS535 4.2 9.9 0.7
CB A:GLN461 4.2 18.3 1.0
NE2 A:GLN461 4.3 40.0 1.0
NE2 A:GLN497 4.3 9.2 1.0
O A:HOH1592 4.4 20.1 0.5
OE1 A:GLN497 4.5 9.9 1.0
CG A:GLN461 4.5 24.4 1.0
OD1 A:ASN462 4.6 21.4 1.0
N A:ASN462 4.7 11.9 1.0
O A:HOH1306 4.7 14.6 1.0
O A:HOH1195 4.8 20.8 1.0
O A:HOH1194 4.8 26.7 0.7
CD A:GLN497 4.9 10.2 1.0

Zinc binding site 9 out of 22 in 4jjj

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Zinc binding site 9 out of 22 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn723

b:13.5
occ:0.70
O A:HOH1306 1.9 14.6 1.0
O A:HOH1195 1.9 20.8 1.0
ND1 A:HIS535 2.1 10.6 0.7
CD2 A:HIS535 2.1 8.7 0.3
O A:HOH1295 2.1 14.0 0.7
O A:HOH1295 2.3 16.7 0.3
CE1 A:HIS535 2.9 10.1 0.7
CG A:HIS535 3.0 8.9 0.3
ZN A:ZN726 3.1 15.1 0.7
ZN A:ZN724 3.2 14.8 0.7
NE2 A:HIS535 3.2 8.6 0.3
CG A:HIS535 3.2 9.9 0.7
ZN A:ZN725 3.2 17.5 0.7
ZN A:ZN722 3.4 18.7 0.3
O A:HOH1592 3.5 20.1 0.5
CB A:HIS535 3.5 8.9 0.3
O A:HOH1661 3.6 21.5 1.0
O A:HOH1436 3.6 26.3 1.0
CB A:HIS535 3.7 9.3 0.7
O A:HOH1447 3.8 27.3 0.7
O A:ALA542 3.9 7.9 1.0
O A:HOH1194 4.0 26.7 0.7
CA A:HIS535 4.0 9.1 0.3
NE2 A:HIS535 4.1 11.1 0.7
CA A:HIS535 4.1 9.4 0.7
O A:HOH1312 4.1 18.6 1.0
ND1 A:HIS535 4.2 8.5 0.3
CD2 A:HIS535 4.2 9.4 0.7
CE1 A:HIS535 4.3 8.8 0.3
OE1 A:GLN461 4.5 33.1 1.0
O A:HOH1785 4.5 26.8 0.7
O A:ALA534 4.7 11.0 1.0
CD A:PRO544 4.8 8.0 1.0
CG2 A:THR543 4.8 8.1 1.0
O A:HOH1784 4.8 28.4 0.7
CA A:THR543 4.8 7.2 1.0
OE2 A:GLU616 4.9 15.8 1.0
OE1 A:GLU616 5.0 16.2 1.0
C A:HIS535 5.0 8.7 0.3

Zinc binding site 10 out of 22 in 4jjj

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Zinc binding site 10 out of 22 in the The Structure of T. Fusca GH48 D224N Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of The Structure of T. Fusca GH48 D224N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn724

b:14.8
occ:0.70
OE2 A:GLU616 1.9 15.8 1.0
O A:HOH1436 1.9 26.3 1.0
O A:HOH1306 2.0 14.6 1.0
O A:HOH1661 2.0 21.5 1.0
CD A:GLU616 2.6 14.9 1.0
OE1 A:GLU616 2.7 16.2 1.0
ZN A:ZN723 3.2 13.5 0.7
ZN A:ZN726 3.2 15.1 0.7
ZN A:ZN725 3.2 17.5 0.7
O A:HOH1447 3.7 27.3 0.7
O A:HOH1295 3.7 14.0 0.7
O A:HOH1195 3.8 20.8 1.0
CD A:PRO544 3.9 8.0 1.0
CG A:GLU616 4.0 10.3 1.0
O A:HOH1194 4.0 26.7 0.7
CG A:PRO544 4.1 8.6 1.0
O A:HOH1358 4.3 26.0 1.0
O A:ALA542 4.3 7.9 1.0
N A:PRO544 4.5 7.6 1.0
O A:HOH1295 4.5 16.7 0.3
CA A:THR543 4.6 7.2 1.0
O A:HOH1784 4.8 28.4 0.7
C A:THR543 4.9 7.3 1.0
O A:HOH1059 5.0 16.2 1.0
O A:HOH1785 5.0 26.8 0.7

Reference:

M.Kostylev, M.Alahuhta, M.Chen, R.Brunecky, M.E.Himmel, V.V.Lunin, J.Brady, D.B.Wilson. CEL48A From Thermobifida Fusca: Structure and Site Directed Mutagenesis of Key Residues. Biotechnol.Bioeng. V. 111 664 2014.
ISSN: ISSN 0006-3592
PubMed: 24264519
DOI: 10.1002/BIT.25139
Page generated: Wed Dec 16 05:26:30 2020

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