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Zinc in PDB 4iqj: Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome

Enzymatic activity of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome

All present enzymatic activity of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome:
2.7.7.7;

Protein crystallography data

The structure of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome, PDB code: 4iqj was solved by B.Liu, J.Lin, T.Steitz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 188.530, 94.970, 204.080, 90.00, 89.97, 90.00
R / Rfree (%) 26.4 / 30.5

Other elements in 4iqj:

The structure of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Zinc atom in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome (pdb code 4iqj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome, PDB code: 4iqj:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in 4iqj

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Zinc binding site 1 out of 12 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1301

b:1.0
occ:1.00
 OE2 A:GLU72 1.9 0.9 1.0
ND1 A:HIS95 2.4 0.9 1.0
SG A:CYS145 2.5 0.2 1.0
CD A:GLU72 3.0 0.2 1.0
CE1 A:HIS95 3.1 0.3 1.0
ZN A:ZN1303 3.3 0.5 1.0
CG A:HIS95 3.4 0.8 1.0
OE1 A:GLU72 3.5 1.0 1.0
OD2 A:ASP212 3.7 0.4 1.0
CB A:CYS145 3.8 0.6 1.0
CB A:HIS95 3.9 0.1 1.0
CE1 A:HIS47 3.9 0.8 1.0
CG A:GLU72 4.2 0.3 1.0
NE2 A:HIS95 4.3 0.6 1.0
CD2 A:HIS95 4.4 0.2 1.0
NE2 A:HIS11 4.5 0.1 1.0
CG A:ASP212 4.6 0.2 1.0
OD1 A:ASP212 4.6 0.7 1.0
CE1 A:HIS11 4.6 0.0 1.0
ND1 A:HIS47 4.7 0.8 1.0
NE2 A:HIS47 4.9 0.4 1.0

Zinc binding site 2 out of 12 in 4iqj

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Zinc binding site 2 out of 12 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1302

b:0.5
occ:1.00
 OD2 A:ASP20 1.6 0.4 1.0
NE2 A:HIS47 1.9 0.4 1.0
NE2 A:HIS214 1.9 0.5 1.0
CG A:ASP20 2.8 0.0 1.0
CE1 A:HIS214 2.8 0.5 1.0
CE1 A:HIS47 2.8 0.8 1.0
CD2 A:HIS47 2.9 0.9 1.0
CD2 A:HIS214 3.0 0.7 1.0
OD1 A:ASP20 3.4 0.4 1.0
ND1 A:HIS47 4.0 0.8 1.0
ND1 A:HIS214 4.0 1.0 1.0
CG A:HIS47 4.1 0.7 1.0
CB A:ASP20 4.1 0.1 1.0
CG A:HIS214 4.1 0.5 1.0
CE1 A:HIS13 4.3 0.3 1.0
CZ A:PHE244 4.3 0.8 1.0
NE2 A:HIS13 4.5 0.7 1.0
ND1 A:HIS13 4.6 0.8 1.0
ZN A:ZN1303 4.7 0.5 1.0
CD2 A:HIS13 4.9 0.3 1.0
CG A:HIS13 4.9 0.1 1.0

Zinc binding site 3 out of 12 in 4iqj

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Zinc binding site 3 out of 12 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1303

b:0.5
occ:1.00
 OE1 A:GLU72 1.9 1.0 1.0
OD1 A:ASP212 1.9 0.7 1.0
NE2 A:HIS11 2.1 0.1 1.0
NE2 A:HIS13 2.2 0.7 1.0
CG A:ASP212 2.7 0.2 1.0
CD A:GLU72 2.8 0.2 1.0
OD2 A:ASP212 2.9 0.4 1.0
OE2 A:GLU72 3.0 0.9 1.0
CD2 A:HIS11 3.0 0.4 1.0
CE1 A:HIS11 3.1 0.0 1.0
CD2 A:HIS13 3.1 0.3 1.0
CE1 A:HIS13 3.2 0.3 1.0
ZN A:ZN1301 3.3 1.0 1.0
CE1 A:HIS47 4.0 0.8 1.0
CB A:ASP212 4.2 0.4 1.0
ND1 A:HIS11 4.2 0.1 1.0
CG A:HIS11 4.2 0.9 1.0
ND1 A:HIS13 4.3 0.8 1.0
CE1 A:HIS214 4.3 0.5 1.0
CG A:HIS13 4.3 0.1 1.0
CG A:GLU72 4.3 0.3 1.0
NE2 A:HIS47 4.3 0.4 1.0
CA A:ASP212 4.7 0.6 1.0
NE2 A:HIS214 4.7 0.5 1.0
ZN A:ZN1302 4.7 0.5 1.0
CB A:GLU72 4.9 0.9 1.0
ND1 A:HIS47 4.9 0.8 1.0
SG A:CYS145 5.0 0.2 1.0

Zinc binding site 4 out of 12 in 4iqj

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Zinc binding site 4 out of 12 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1301

b:0.7
occ:1.00
 OE2 B:GLU72 1.9 0.1 1.0
ND1 B:HIS95 2.4 0.7 1.0
SG B:CYS145 2.7 0.7 1.0
ZN B:ZN1303 3.0 0.2 1.0
CD B:GLU72 3.0 0.2 1.0
CE1 B:HIS95 3.0 0.3 1.0
OE1 B:GLU72 3.3 0.9 1.0
CG B:HIS95 3.5 0.8 1.0
OD2 B:ASP212 3.5 0.0 1.0
CB B:CYS145 3.8 0.0 1.0
CE1 B:HIS47 3.9 0.1 1.0
CB B:HIS95 4.1 0.9 1.0
OD1 B:ASP212 4.2 0.3 1.0
NE2 B:HIS95 4.2 1.0 1.0
CG B:GLU72 4.3 0.1 1.0
CG B:ASP212 4.3 0.3 1.0
NE2 B:HIS11 4.4 0.9 1.0
CD2 B:HIS95 4.5 0.2 1.0
CE1 B:HIS11 4.5 0.3 1.0
ND1 B:HIS47 4.7 0.3 1.0
NE2 B:HIS13 4.7 0.3 1.0
NE2 B:HIS47 4.9 0.0 1.0
ZN B:ZN1302 4.9 0.4 1.0

Zinc binding site 5 out of 12 in 4iqj

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Zinc binding site 5 out of 12 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1302

b:0.4
occ:1.00
 OD2 B:ASP20 1.7 1.0 1.0
NE2 B:HIS47 2.0 0.0 1.0
NE2 B:HIS214 2.2 0.3 1.0
CE1 B:HIS47 2.6 0.1 1.0
CG B:ASP20 3.0 0.7 1.0
CD2 B:HIS214 3.2 0.5 1.0
CE1 B:HIS214 3.2 0.5 1.0
CD2 B:HIS47 3.2 0.6 1.0
OD1 B:ASP20 3.7 0.8 1.0
ND1 B:HIS47 3.9 0.3 1.0
CB B:ASP20 4.0 0.8 1.0
CG B:HIS47 4.1 0.2 1.0
CZ B:PHE244 4.2 0.3 1.0
ND1 B:HIS214 4.3 0.1 1.0
CG B:HIS214 4.3 0.4 1.0
CE1 B:HIS13 4.4 0.1 1.0
NE2 B:HIS13 4.4 0.3 1.0
ZN B:ZN1303 4.5 0.2 1.0
ND1 B:HIS13 4.7 0.5 1.0
CD2 B:HIS13 4.8 0.9 1.0
CE2 B:PHE244 4.9 0.5 1.0
ZN B:ZN1301 4.9 0.7 1.0
CG B:HIS13 5.0 0.5 1.0

Zinc binding site 6 out of 12 in 4iqj

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Zinc binding site 6 out of 12 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1303

b:0.2
occ:1.00
 OD1 B:ASP212 1.6 0.3 1.0
NE2 B:HIS13 2.1 0.3 1.0
OE1 B:GLU72 2.2 0.9 1.0
NE2 B:HIS11 2.3 0.9 1.0
CG B:ASP212 2.4 0.3 1.0
OD2 B:ASP212 2.6 0.0 1.0
ZN B:ZN1301 3.0 0.7 1.0
CD B:GLU72 3.0 0.2 1.0
CE1 B:HIS13 3.1 0.1 1.0
CD2 B:HIS13 3.1 0.9 1.0
OE2 B:GLU72 3.1 0.1 1.0
CD2 B:HIS11 3.2 0.3 1.0
CE1 B:HIS11 3.3 0.3 1.0
CB B:ASP212 4.0 1.0 1.0
CE1 B:HIS214 4.1 0.5 1.0
CE1 B:HIS47 4.1 0.1 1.0
ND1 B:HIS13 4.2 0.5 1.0
CG B:HIS13 4.3 0.5 1.0
ND1 B:HIS11 4.4 0.7 1.0
CG B:HIS11 4.4 0.4 1.0
NE2 B:HIS47 4.4 0.0 1.0
CG B:GLU72 4.5 0.1 1.0
NE2 B:HIS214 4.5 0.3 1.0
ZN B:ZN1302 4.5 0.4 1.0
CA B:ASP212 4.6 0.4 1.0
O B:ASP212 5.0 0.7 1.0

Zinc binding site 7 out of 12 in 4iqj

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Zinc binding site 7 out of 12 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1301

b:0.7
occ:1.00
 OE2 C:GLU72 2.1 0.6 1.0
SG C:CYS145 2.1 0.4 1.0
ND1 C:HIS95 2.4 0.8 1.0
CD C:GLU72 3.1 0.3 1.0
CE1 C:HIS95 3.1 0.9 1.0
ZN C:ZN1303 3.3 0.2 1.0
CG C:HIS95 3.5 0.6 1.0
CB C:CYS145 3.5 1.0 1.0
OE1 C:GLU72 3.5 0.1 1.0
OD2 C:ASP212 3.9 0.6 1.0
CB C:HIS95 3.9 0.1 1.0
CE1 C:HIS47 3.9 0.6 1.0
NE2 C:HIS95 4.3 0.3 1.0
CG C:GLU72 4.4 0.5 1.0
CD2 C:HIS95 4.5 0.6 1.0
NE2 C:HIS11 4.5 0.1 1.0
OD1 C:ASP212 4.5 0.6 1.0
CG C:ASP212 4.6 1.0 1.0
CE1 C:HIS11 4.6 0.4 1.0
CA C:CYS145 4.7 0.1 1.0
ND1 C:HIS47 4.8 0.1 1.0
NE2 C:HIS47 4.8 0.3 1.0
N C:CYS145 4.8 0.8 1.0
NE2 C:HIS13 4.8 0.3 1.0

Zinc binding site 8 out of 12 in 4iqj

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Zinc binding site 8 out of 12 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1302

b:0.9
occ:1.00
 OD2 C:ASP20 1.6 0.1 1.0
NE2 C:HIS214 1.7 0.8 1.0
NE2 C:HIS47 2.1 0.3 1.0
CG C:ASP20 2.6 0.7 1.0
CE1 C:HIS214 2.7 0.3 1.0
CD2 C:HIS214 2.7 0.5 1.0
CD2 C:HIS47 3.0 0.1 1.0
OD1 C:ASP20 3.1 0.5 1.0
CE1 C:HIS47 3.2 0.6 1.0
ND1 C:HIS214 3.8 0.8 1.0
CB C:ASP20 3.8 0.8 1.0
CG C:HIS214 3.9 0.5 1.0
CE1 C:HIS13 4.1 0.5 1.0
CG C:HIS47 4.2 0.6 1.0
CZ C:PHE244 4.2 0.5 1.0
ND1 C:HIS47 4.3 0.1 1.0
ND1 C:HIS13 4.3 0.9 1.0
NE2 C:HIS13 4.3 0.3 1.0
CG C:HIS13 4.6 0.2 1.0
CD2 C:HIS13 4.6 0.5 1.0
ZN C:ZN1303 4.6 0.2 1.0
OG C:SER17 4.7 0.9 1.0
CE2 C:PHE244 4.9 0.2 1.0

Zinc binding site 9 out of 12 in 4iqj

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Zinc binding site 9 out of 12 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1303

b:0.2
occ:1.00
 NE2 C:HIS13 1.7 0.3 1.0
OE1 C:GLU72 2.0 0.1 1.0
OD1 C:ASP212 2.1 0.6 1.0
NE2 C:HIS11 2.4 0.1 1.0
CE1 C:HIS13 2.6 0.5 1.0
CD2 C:HIS13 2.9 0.5 1.0
CD C:GLU72 3.0 0.3 1.0
CG C:ASP212 3.1 1.0 1.0
OE2 C:GLU72 3.2 0.6 1.0
ZN C:ZN1301 3.3 0.7 1.0
CD2 C:HIS11 3.3 0.1 1.0
OD2 C:ASP212 3.3 0.6 1.0
CE1 C:HIS11 3.4 0.4 1.0
ND1 C:HIS13 3.8 0.9 1.0
CG C:HIS13 3.9 0.2 1.0
CE1 C:HIS47 4.0 0.6 1.0
NE2 C:HIS47 4.1 0.3 1.0
CE1 C:HIS214 4.1 0.3 1.0
CG C:GLU72 4.4 0.5 1.0
CB C:ASP212 4.5 0.4 1.0
CG C:HIS11 4.5 0.8 1.0
ND1 C:HIS11 4.5 0.5 1.0
NE2 C:HIS214 4.5 0.8 1.0
ZN C:ZN1302 4.6 0.9 1.0
SG C:CYS145 4.9 0.4 1.0
CB C:GLU72 4.9 0.9 1.0
ND1 C:HIS47 4.9 0.1 1.0
CA C:ASP212 4.9 0.4 1.0
O C:THR45 5.0 0.0 1.0

Zinc binding site 10 out of 12 in 4iqj

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Zinc binding site 10 out of 12 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1301

b:0.6
occ:1.00
 OE2 D:GLU72 2.1 0.5 1.0
SG D:CYS145 2.1 0.3 1.0
ND1 D:HIS95 2.4 0.5 1.0
CE1 D:HIS95 3.1 0.7 1.0
CD D:GLU72 3.1 0.7 1.0
ZN D:ZN1303 3.2 0.4 1.0
CB D:CYS145 3.4 0.7 1.0
OE1 D:GLU72 3.5 0.2 1.0
OD2 D:ASP212 3.5 0.9 1.0
CG D:HIS95 3.5 0.1 1.0
CB D:HIS95 3.9 0.1 1.0
NE2 D:HIS11 4.3 0.5 1.0
CE1 D:HIS47 4.3 0.8 1.0
NE2 D:HIS95 4.4 0.1 1.0
CE1 D:HIS11 4.4 0.3 1.0
CG D:ASP212 4.4 0.8 1.0
CG D:GLU72 4.4 0.1 1.0
OD1 D:ASP212 4.5 0.1 1.0
CD2 D:HIS95 4.6 0.9 1.0
CA D:CYS145 4.7 0.8 1.0
CE1 D:HIS13 4.7 0.4 1.0
N D:CYS145 4.8 0.2 1.0

Reference:

B.Liu, J.Lin, T.A.Steitz. Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome Structure V. 21 658 2013.
ISSN: ISSN 0969-2126
PubMed: 23478062
DOI: 10.1016/J.STR.2013.02.002
Page generated: Sun Oct 27 00:51:09 2024

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