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Zinc in PDB 4idr: Human Carbonic Anhydrase II Proton Transfer Double Mutant

Enzymatic activity of Human Carbonic Anhydrase II Proton Transfer Double Mutant

All present enzymatic activity of Human Carbonic Anhydrase II Proton Transfer Double Mutant:
4.2.1.1;

Protein crystallography data

The structure of Human Carbonic Anhydrase II Proton Transfer Double Mutant, PDB code: 4idr was solved by R.M.Mikulski, D.M.West, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.61 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.095, 41.129, 72.100, 90.00, 104.46, 90.00
R / Rfree (%) 16.6 / 20.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Human Carbonic Anhydrase II Proton Transfer Double Mutant (pdb code 4idr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Human Carbonic Anhydrase II Proton Transfer Double Mutant, PDB code: 4idr:

Zinc binding site 1 out of 1 in 4idr

Go back to Zinc Binding Sites List in 4idr
Zinc binding site 1 out of 1 in the Human Carbonic Anhydrase II Proton Transfer Double Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Carbonic Anhydrase II Proton Transfer Double Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Zn301

b:16.7
occ:1.00
O X:HOH407 2.0 16.2 1.0
NE2 X:HIS96 2.0 14.3 1.0
NE2 X:HIS94 2.0 14.7 1.0
ND1 X:HIS119 2.1 15.8 1.0
CD2 X:HIS94 2.9 14.1 1.0
CE1 X:HIS119 3.0 13.7 1.0
CE1 X:HIS96 3.0 14.6 1.0
CD2 X:HIS96 3.0 17.6 1.0
CE1 X:HIS94 3.1 17.8 1.0
CG X:HIS119 3.2 12.4 1.0
CB X:HIS119 3.6 12.5 1.0
O X:HOH448 3.7 22.8 1.0
OG1 X:THR199 3.7 17.4 1.0
OE1 X:GLU106 4.0 15.0 1.0
O X:HOH495 4.1 28.3 1.0
ND1 X:HIS96 4.1 15.3 1.0
CG X:HIS94 4.1 19.3 1.0
NE2 X:HIS119 4.1 14.8 1.0
CG X:HIS96 4.1 16.6 1.0
ND1 X:HIS94 4.2 17.0 1.0
CD2 X:HIS119 4.2 16.4 1.0
O X:HOH460 4.4 26.8 1.0
O X:HOH475 4.4 25.2 1.0
O X:HOH626 4.5 38.7 1.0
CD X:GLU106 4.8 16.3 1.0

Reference:

R.Mikulski, D.West, K.H.Sippel, B.S.Avvaru, M.Aggarwal, C.Tu, R.Mckenna, D.N.Silverman. Water Networks in Fast Proton Transfer During Catalysis By Human Carbonic Anhydrase II. Biochemistry V. 52 125 2013.
ISSN: ISSN 0006-2960
PubMed: 23215152
DOI: 10.1021/BI301099K
Page generated: Wed Aug 20 18:50:44 2025

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