Zinc in PDB 4i6v: The Crystal Structure of An Amidohydrolase 2 From Planctomyces Limnophilus Dsm 3776

The structure of The Crystal Structure of An Amidohydrolase 2 From Planctomyces Limnophilus Dsm 3776, PDB code: 4i6v was solved by Y.Fan, K.Tan, R.Wu, J.Bearden, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.89 / 2.14
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	81.224, 111.245, 147.148, 90.00, 90.00, 90.00
R / Rfree (%)	16.8 / 21.8

The binding sites of Zinc atom in the The Crystal Structure of An Amidohydrolase 2 From Planctomyces Limnophilus Dsm 3776 (pdb code 4i6v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the The Crystal Structure of An Amidohydrolase 2 From Planctomyces Limnophilus Dsm 3776, PDB code: 4i6v:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the The Crystal Structure of An Amidohydrolase 2 From Planctomyces Limnophilus Dsm 3776


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of An Amidohydrolase 2 From Planctomyces Limnophilus Dsm 3776 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:54.2 occ:1.00 NE2 A:HIS27 2.1 41.2 1.0 OD1 A:ASP374 2.2 41.0 1.0 NE2 A:HIS25 2.3 38.5 1.0 O A:HOH696 2.4 40.9 1.0 CE1 A:HIS27 2.8 37.9 1.0 O A:HOH697 2.8 61.0 1.0 CG A:ASP374 3.2 39.4 1.0 CE1 A:HIS25 3.2 34.5 1.0 CD2 A:HIS25 3.2 35.3 1.0 CD2 A:HIS27 3.3 31.8 1.0 OD2 A:ASP374 3.4 48.1 1.0 ND1 A:HIS27 4.0 37.5 1.0 CG A:HIS27 4.3 35.9 1.0 ND1 A:HIS25 4.3 34.1 1.0 CG A:HIS25 4.4 35.5 1.0 O A:HOH705 4.5 54.2 1.0 CB A:ASP374 4.5 35.5 1.0 NE1 A:TRP343 4.7 27.4 1.0 CE A:MSE274 4.8 63.4 1.0 CA A:ASP374 4.9 30.6 1.0 C2 A:GOL503 5.0 74.7 1.0

Zinc binding site 2 out of 3 in the The Crystal Structure of An Amidohydrolase 2 From Planctomyces Limnophilus Dsm 3776


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of An Amidohydrolase 2 From Planctomyces Limnophilus Dsm 3776 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:42.9 occ:1.00 NE2 B:HIS27 2.1 41.2 1.0 OD1 B:ASP374 2.2 31.3 1.0 NE2 B:HIS25 2.3 33.2 1.0 O B:HOH660 2.3 31.6 1.0 O B:HOH662 2.4 38.5 1.0 CE1 B:HIS27 2.9 37.8 1.0 CD2 B:HIS25 3.1 33.4 1.0 CG B:ASP374 3.1 36.1 1.0 CD2 B:HIS27 3.2 33.0 1.0 CE1 B:HIS25 3.3 36.2 1.0 OD2 B:ASP374 3.4 39.3 1.0 ND1 B:HIS27 4.1 41.4 1.0 CG B:HIS27 4.3 37.4 1.0 CG B:HIS25 4.3 32.7 1.0 ND1 B:HIS25 4.4 34.8 1.0 CB B:ASP374 4.4 34.8 1.0 CA B:ASP374 4.7 33.0 1.0 NE1 B:TRP343 5.0 31.0 1.0

Zinc binding site 3 out of 3 in the The Crystal Structure of An Amidohydrolase 2 From Planctomyces Limnophilus Dsm 3776


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Crystal Structure of An Amidohydrolase 2 From Planctomyces Limnophilus Dsm 3776 within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn501 b:60.8 occ:1.00 NE2 C:HIS25 2.2 35.5 1.0 NE2 C:HIS27 2.2 44.6 1.0 OD1 C:ASP374 2.3 41.0 1.0 O C:HOH736 2.6 63.8 1.0 CE1 C:HIS25 3.0 31.0 1.0 CG C:ASP374 3.2 42.7 1.0 CD2 C:HIS27 3.2 41.3 1.0 CE1 C:HIS27 3.2 47.9 1.0 CD2 C:HIS25 3.3 33.4 1.0 OD2 C:ASP374 3.4 42.4 1.0 ND1 C:HIS25 4.2 35.7 1.0 ND1 C:HIS27 4.3 45.4 1.0 CG C:HIS27 4.3 43.3 1.0 CG C:HIS25 4.4 36.1 1.0 NE1 C:TRP343 4.5 30.1 1.0 CB C:ASP374 4.6 34.5 1.0 SE C:MSE274 4.7 90.6 0.8 O2 C:GOL504 4.8 71.7 1.0 O1 C:GOL504 4.8 84.5 1.0 CA C:ASP374 4.9 31.9 1.0 C2 C:GOL504 4.9 75.5 1.0

Y.Fan, K.Tan, R.Wu, J.Bearden, A.Joachimiak. The Crystal Structure of An Amidohydrolase 2 From Planctomyces Limnophilus Dsm 3776 To Be Published.