Zinc in PDB 4hgx: Crystal Structure of Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 with Unknown Ligand

The structure of Crystal Structure of Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 with Unknown Ligand, PDB code: 4hgx was solved by K.M.Boyko, M.A.Gorbacheva, D.A.Korzhenevskiy, P.V.Dorovatovsky, T.V.Rakitina, A.V.Lipkin, I.A.Shumilin, W.Minor, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.15 / 2.60
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	93.180, 93.180, 125.210, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 30.2

The binding sites of Zinc atom in the Crystal Structure of Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 with Unknown Ligand (pdb code 4hgx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 with Unknown Ligand, PDB code: 4hgx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 with Unknown Ligand


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 with Unknown Ligand within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:40.6 occ:1.00 OD1 A:ASP170 2.0 25.2 1.0 OE2 A:GLU245 2.0 38.9 1.0 OE2 A:GLU139 2.0 41.0 1.0 ND1 A:HIS197 2.2 32.1 1.0 O A:HOH403 2.3 22.5 1.0 CD A:GLU245 2.7 45.0 1.0 OE1 A:GLU245 2.8 36.0 1.0 CD A:GLU139 2.9 37.5 1.0 CE1 A:HIS197 3.1 30.2 1.0 CG A:ASP170 3.1 30.8 1.0 OE1 A:GLU139 3.1 43.5 1.0 CG A:HIS197 3.2 29.4 1.0 CB A:HIS197 3.5 32.7 1.0 CB A:ASP170 3.8 32.9 1.0 NH2 A:ARG215 4.1 44.5 1.0 OD2 A:ASP170 4.2 33.2 1.0 CG A:GLU245 4.2 47.0 1.0 NE2 A:HIS197 4.2 25.6 1.0 CD2 A:HIS197 4.3 33.0 1.0 CG A:GLU139 4.3 33.8 1.0 CB A:GLU245 4.6 52.4 1.0 CD2 A:LEU168 4.8 34.1 1.0 CD1 A:LEU168 4.8 25.7 1.0 CA A:ASP170 4.8 35.0 1.0 OD1 A:ASN71 4.9 25.0 1.0 CE2 A:PHE247 4.9 61.2 1.0 CD2 A:HIS173 5.0 35.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 with Unknown Ligand


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 with Unknown Ligand within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:31.0 occ:1.00 OE2 B:GLU139 2.0 26.4 1.0 OD2 B:ASP170 2.0 27.3 1.0 ND1 B:HIS197 2.1 28.9 1.0 OE1 B:GLU245 2.2 35.5 1.0 CD B:GLU139 2.8 25.7 1.0 CG B:HIS197 3.0 26.3 1.0 OE1 B:GLU139 3.0 23.3 1.0 CD B:GLU245 3.1 32.1 1.0 CG B:ASP170 3.1 25.8 1.0 CE1 B:HIS197 3.2 27.1 1.0 OE2 B:GLU245 3.2 34.1 1.0 CB B:HIS197 3.3 25.9 1.0 CB B:ASP170 3.8 23.9 1.0 OD1 B:ASP170 4.1 27.7 1.0 NH2 B:ARG215 4.2 22.7 1.0 CD2 B:HIS197 4.2 25.6 1.0 NE2 B:HIS197 4.3 28.3 1.0 CG B:GLU139 4.3 22.8 1.0 CD2 B:LEU168 4.4 15.3 1.0 NH1 B:ARG215 4.5 21.1 1.0 CG B:GLU245 4.5 29.3 1.0 CD2 B:HIS173 4.5 23.8 1.0 NE2 B:HIS173 4.8 23.3 1.0 CA B:HIS197 4.8 26.2 1.0 CZ B:ARG215 4.8 24.6 1.0 CB B:GLU245 4.9 30.4 1.0

K.M.Boyko, M.A.Gorbacheva, D.A.Korzhenevskiy, P.V.Dorovatovsky, T.V.Rakitina, A.V.Lipkin, I.A.Shumilin, W.Minor, V.O.Popov. Crystal Structure of Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 with Unknown Ligand To Be Published.