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Zinc in PDB 4fup: Structural Basis For ZN2+-Dependent Intercellular Adhesion in Staphylococcal Biofilms

Protein crystallography data

The structure of Structural Basis For ZN2+-Dependent Intercellular Adhesion in Staphylococcal Biofilms, PDB code: 4fup was solved by D.G.Conrady, J.J.Wilson, A.B.Herr, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.36 / 2.51
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 83.101, 34.240, 138.779, 90.00, 101.31, 90.00
R / Rfree (%) 21.9 / 27.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Basis For ZN2+-Dependent Intercellular Adhesion in Staphylococcal Biofilms (pdb code 4fup). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural Basis For ZN2+-Dependent Intercellular Adhesion in Staphylococcal Biofilms, PDB code: 4fup:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4fup

Go back to Zinc Binding Sites List in 4fup
Zinc binding site 1 out of 2 in the Structural Basis For ZN2+-Dependent Intercellular Adhesion in Staphylococcal Biofilms


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Basis For ZN2+-Dependent Intercellular Adhesion in Staphylococcal Biofilms within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:37.9
occ:1.00
OE2 A:GLU203 2.0 33.0 1.0
OD2 A:ASP149 2.1 34.5 1.0
CD A:GLU203 2.7 44.3 1.0
OE1 A:GLU203 2.8 36.5 1.0
CG A:ASP149 3.0 27.1 1.0
O A:HOH455 3.0 38.8 1.0
CB A:ASP149 3.4 18.3 1.0
O A:HOH426 3.6 22.7 1.0
O A:HOH450 4.0 48.3 1.0
OD1 A:ASP149 4.0 23.0 1.0
CG A:GLU203 4.1 35.0 1.0
O A:HOH454 4.3 37.0 1.0
CA A:ASP149 4.6 16.7 1.0
CB A:GLU203 4.7 27.3 1.0

Zinc binding site 2 out of 2 in 4fup

Go back to Zinc Binding Sites List in 4fup
Zinc binding site 2 out of 2 in the Structural Basis For ZN2+-Dependent Intercellular Adhesion in Staphylococcal Biofilms


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Basis For ZN2+-Dependent Intercellular Adhesion in Staphylococcal Biofilms within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:40.2
occ:1.00
OD2 B:ASP21 1.9 46.3 1.0
ND1 B:HIS75 2.0 37.6 1.0
O B:HOH428 2.6 23.1 1.0
CE1 B:HIS75 2.9 37.1 1.0
CG B:ASP21 3.0 39.6 1.0
CG B:HIS75 3.2 35.2 1.0
CB B:ASP21 3.6 25.9 1.0
CB B:HIS75 3.7 31.2 1.0
OD1 B:ASP21 4.0 42.8 1.0
CG2 B:VAL32 4.1 27.7 1.0
NE2 B:HIS75 4.1 37.2 1.0
CD2 B:HIS75 4.3 37.2 1.0
CE B:MET24 4.3 41.4 1.0
SD B:MET24 4.7 44.5 1.0
CG B:MET24 4.7 38.7 1.0
CG1 B:VAL32 5.0 28.4 1.0

Reference:

D.G.Conrady, J.J.Wilson, A.B.Herr. Structural Basis For ZN2+-Dependent Intercellular Adhesion in Staphylococcal Biofilms. Proc.Natl.Acad.Sci.Usa V. 110 E202 2013.
ISSN: ISSN 0027-8424
PubMed: 23277549
DOI: 10.1073/PNAS.1208134110
Page generated: Wed Dec 16 05:18:11 2020

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