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Zinc in PDB 4feb: Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta)

Protein crystallography data

The structure of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta), PDB code: 4feb was solved by M.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 155.052, 177.278, 78.868, 90.00, 109.03, 90.00
R / Rfree (%) 22.9 / 27.5

Other elements in 4feb:

The structure of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 38;

Binding sites:

The binding sites of Zinc atom in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) (pdb code 4feb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 38 binding sites of Zinc where determined in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta), PDB code: 4feb:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 38 in 4feb

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Zinc binding site 1 out of 38 in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:60.0
occ:0.40
O A:HIS39 2.7 0.8 1.0
ND1 A:HIS39 2.8 1.0 1.0
CE1 A:HIS39 3.0 0.8 1.0
CG A:HIS39 3.8 99.5 1.0
C A:HIS39 3.9 97.3 1.0
NE2 A:HIS39 4.0 0.9 1.0
CD2 A:HIS39 4.5 0.1 1.0
CB A:HIS39 4.6 94.1 1.0
CA A:PRO40 4.6 0.0 1.0
N A:ASP41 4.7 0.2 1.0
C A:PRO40 4.7 0.2 1.0
N A:PRO40 4.8 97.8 1.0
O A:HOH608 4.8 34.5 1.0
CA A:HIS39 4.8 93.4 1.0

Zinc binding site 2 out of 38 in 4feb

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Zinc binding site 2 out of 38 in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:60.0
occ:0.50
O A:HOH626 2.5 46.9 1.0
CE1 A:HIS203 2.7 0.8 1.0
O A:HOH625 2.8 15.0 1.0
O A:HOH624 2.8 32.7 1.0
NE2 A:HIS203 3.3 0.5 1.0
ND1 A:HIS203 3.9 0.4 1.0
CB A:PRO133 4.3 91.3 1.0
CB A:ASN201 4.4 0.1 1.0
CG A:ASN201 4.4 0.6 1.0
OD1 A:ASN201 4.5 0.6 1.0
CE A:LYS137 4.6 0.7 0.5
CD2 A:HIS203 4.6 0.4 1.0
CD A:LYS137 4.7 0.8 0.5
NZ A:LYS137 4.8 0.9 0.5
ND2 A:ASN201 4.9 0.7 1.0
CG A:HIS203 4.9 0.5 1.0
O A:PRO133 5.0 98.2 1.0

Zinc binding site 3 out of 38 in 4feb

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Zinc binding site 3 out of 38 in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn503

b:60.0
occ:0.50
OE2 A:GLU44 3.6 0.6 1.0
OE1 A:GLU44 3.7 0.6 1.0
CG A:LYS42 4.0 0.6 1.0
CD A:GLU44 4.0 0.9 1.0
CA A:LYS42 4.1 0.7 1.0
OD1 A:ASN12 4.1 89.9 1.0
N A:LYS42 4.2 0.1 1.0
ND2 A:ASN12 4.4 90.9 1.0
CH2 A:TRP62 4.6 95.6 1.0
CB A:LYS42 4.6 0.9 1.0
CG A:ASN12 4.7 88.6 1.0

Zinc binding site 4 out of 38 in 4feb

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Zinc binding site 4 out of 38 in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn504

b:60.0
occ:0.20
O A:GLU288 3.1 0.9 1.0
N A:ALA292 3.5 0.6 1.0
CB A:GLU291 3.7 0.1 1.0
CD A:GLU291 3.9 0.1 1.0
CG A:GLU288 3.9 0.2 1.0
CA A:ALA292 3.9 0.5 1.0
CG A:GLU291 4.0 0.9 1.0
CB A:ALA292 4.0 0.8 1.0
OE1 A:GLU291 4.0 0.6 1.0
C A:GLU291 4.0 0.2 1.0
C A:GLU288 4.1 0.4 1.0
OE2 A:GLU291 4.3 0.0 1.0
CA A:GLU288 4.3 0.5 1.0
CA A:GLU291 4.4 0.4 1.0
CE A:LYS295 4.5 0.9 1.0
O A:GLU291 4.7 0.4 1.0
CB A:GLU288 4.7 0.9 1.0
NZ A:LYS295 4.8 0.6 1.0

Zinc binding site 5 out of 38 in 4feb

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Zinc binding site 5 out of 38 in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn505

b:60.0
occ:0.40
OE2 A:GLU310 2.9 0.2 1.0
ZN A:ZN507 2.9 60.0 0.3
OE1 A:GLU291 3.5 0.6 1.0
CD A:GLU310 3.5 0.4 1.0
OE1 A:GLU310 3.7 0.5 1.0
CD A:GLU291 4.2 0.1 1.0
OE2 A:GLU291 4.7 0.0 1.0
CG A:GLU310 4.7 0.4 1.0
CE1 A:TYR307 4.8 0.9 1.0
CB A:ASP287 4.9 0.1 1.0
CD1 A:TYR307 4.9 0.4 1.0

Zinc binding site 6 out of 38 in 4feb

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Zinc binding site 6 out of 38 in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) within 5.0Å range:

Zinc binding site 7 out of 38 in 4feb

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Zinc binding site 7 out of 38 in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn507

b:60.0
occ:0.30
OE1 A:GLU291 2.8 0.6 1.0
ZN A:ZN505 2.9 60.0 0.4
OE2 A:GLU291 3.2 0.0 1.0
CD A:GLU291 3.3 0.1 1.0
CG A:GLU291 4.8 0.9 1.0

Zinc binding site 8 out of 38 in 4feb

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Zinc binding site 8 out of 38 in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn508

b:60.0
occ:0.40
CE1 A:HIS399 3.1 60.0 0.5
ND1 A:HIS399 3.4 60.0 0.5
NE2 A:HIS399 3.5 60.0 0.5
CD2 A:HIS399 4.0 60.0 0.5
CG A:HIS399 4.0 60.0 0.5
CB A:HIS399 5.0 60.0 0.5

Zinc binding site 9 out of 38 in 4feb

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Zinc binding site 9 out of 38 in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn501

b:60.0
occ:0.80
O B:HOH637 2.6 60.0 1.0
OE2 B:GLU288 2.9 0.5 1.0
OE1 B:GLU288 3.0 0.7 1.0
CD B:GLU288 3.1 0.2 1.0
ZN B:ZN512 3.2 60.0 0.8
NZ B:LYS26 4.0 0.4 1.0
CG B:GLU288 4.4 0.1 1.0
CB B:GLU288 4.7 0.4 1.0

Zinc binding site 10 out of 38 in 4feb

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Zinc binding site 10 out of 38 in the Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of HTT36Q3H-EX1-X1-C2(Beta) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn502

b:60.0
occ:0.70
ZN B:ZN507 3.0 60.0 0.7
OE2 B:GLU172 3.5 97.2 1.0
N B:ASN173 4.2 98.5 1.0
O B:HOH603 4.4 53.0 1.0
CD B:GLU172 4.5 93.4 1.0
OD1 B:ASN173 4.5 0.4 1.0
CA B:GLU172 4.9 91.4 1.0
CA B:ASN173 5.0 0.9 1.0

Reference:

M.Kim, M.Kim. N/A N/A.
PubMed: 23370273
DOI: 10.4161/PRI.23807
Page generated: Wed Dec 16 05:17:25 2020

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