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Zinc in PDB 4f0r: Crystal Structure of An Adenosine Deaminase Homolog From Chromobacterium Violaceum (Target Nysgrc-019589) Bound Zn and 5'- Methylthioadenosine (Unproductive Complex)

Enzymatic activity of Crystal Structure of An Adenosine Deaminase Homolog From Chromobacterium Violaceum (Target Nysgrc-019589) Bound Zn and 5'- Methylthioadenosine (Unproductive Complex)

All present enzymatic activity of Crystal Structure of An Adenosine Deaminase Homolog From Chromobacterium Violaceum (Target Nysgrc-019589) Bound Zn and 5'- Methylthioadenosine (Unproductive Complex):
3.5.4.28; 3.5.4.31;

Protein crystallography data

The structure of Crystal Structure of An Adenosine Deaminase Homolog From Chromobacterium Violaceum (Target Nysgrc-019589) Bound Zn and 5'- Methylthioadenosine (Unproductive Complex), PDB code: 4f0r was solved by J.Kim, M.W.Vetting, J.M.Sauder, S.K.Burley, F.M.Raushel, J.B.Bonanno, S.C.Almo, New York Structural Genomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.80
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 101.152, 101.152, 88.623, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 19.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of An Adenosine Deaminase Homolog From Chromobacterium Violaceum (Target Nysgrc-019589) Bound Zn and 5'- Methylthioadenosine (Unproductive Complex) (pdb code 4f0r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of An Adenosine Deaminase Homolog From Chromobacterium Violaceum (Target Nysgrc-019589) Bound Zn and 5'- Methylthioadenosine (Unproductive Complex), PDB code: 4f0r:

Zinc binding site 1 out of 1 in 4f0r

Go back to Zinc Binding Sites List in 4f0r
Zinc binding site 1 out of 1 in the Crystal Structure of An Adenosine Deaminase Homolog From Chromobacterium Violaceum (Target Nysgrc-019589) Bound Zn and 5'- Methylthioadenosine (Unproductive Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of An Adenosine Deaminase Homolog From Chromobacterium Violaceum (Target Nysgrc-019589) Bound Zn and 5'- Methylthioadenosine (Unproductive Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:15.2
occ:1.00
 NE2 A:HIS70 2.0 12.6 1.0
NE2 A:HIS72 2.0 12.3 1.0
OD1 A:ASP307 2.1 17.2 1.0
NE2 A:HIS219 2.2 15.4 1.0
CE1 A:HIS70 2.9 11.8 1.0
CE1 A:HIS72 3.0 13.8 1.0
CD2 A:HIS219 3.0 14.1 1.0
CD2 A:HIS72 3.0 12.7 1.0
CD2 A:HIS70 3.0 12.5 1.0
CG A:ASP307 3.2 15.3 1.0
CE1 A:HIS219 3.3 16.2 1.0
OD2 A:ASP307 3.7 15.6 1.0
NE2 A:HIS256 3.9 16.2 1.0
ND1 A:HIS70 4.1 12.2 1.0
ND1 A:HIS72 4.1 13.8 1.0
CG A:HIS70 4.2 12.0 1.0
CG A:HIS72 4.2 10.6 1.0
CG A:HIS219 4.3 12.9 1.0
O A:HOH867 4.3 31.7 1.0
ND1 A:HIS219 4.3 14.9 1.0
CB A:ASP307 4.5 12.5 1.0
CE1 A:HIS256 4.7 14.6 1.0
CA A:ASP307 4.7 13.6 1.0
CD2 A:HIS256 4.8 16.8 1.0
O A:HOH788 5.0 25.2 1.0

Reference:

J.Kim, M.W.Vetting, J.M.Sauder, S.K.Burley, F.M.Raushel, J.B.Bonanno, S.C.Almo. Crystal Structure of An Adenosine Deaminase Homolog From Chromobacterium Violaceum (Target Nysgrc-019589) Bound Zn and 5'-Methylthioadenosine (Unproductive Complex) To Be Published.
Page generated: Sat Oct 26 22:13:32 2024

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