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Zinc in PDB 4ej6: Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021

Protein crystallography data

The structure of Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021, PDB code: 4ej6 was solved by P.Sampathkumar, S.C.Almo, New York Structural Genomics Researchconsortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.89
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 107.607, 107.607, 137.160, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 20.2

Other elements in 4ej6:

The structure of Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 (pdb code 4ej6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021, PDB code: 4ej6:

Zinc binding site 1 out of 1 in 4ej6

Go back to Zinc Binding Sites List in 4ej6
Zinc binding site 1 out of 1 in the Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn418

b:31.4
occ:1.00
SG A:CYS91 2.3 32.0 1.0
SG A:CYS88 2.3 33.7 1.0
SG A:CYS94 2.3 32.4 1.0
SG A:CYS102 2.4 28.6 1.0
CB A:CYS102 3.3 28.1 1.0
CB A:CYS91 3.4 35.2 1.0
CB A:CYS94 3.5 32.4 1.0
N A:CYS88 3.5 34.4 1.0
CB A:CYS88 3.5 35.6 1.0
CA A:CYS102 3.7 30.1 1.0
N A:GLY89 3.8 31.9 1.0
CA A:CYS88 3.9 34.3 1.0
N A:CYS91 3.9 36.8 1.0
N A:ARG103 4.1 30.2 1.0
CA A:CYS91 4.2 34.5 1.0
C A:CYS102 4.3 31.5 1.0
C A:CYS88 4.3 36.0 1.0
N A:CYS94 4.3 31.7 1.0
N A:ARG90 4.4 35.9 1.0
CA A:CYS94 4.4 32.2 1.0
N A:ASN104 4.5 31.3 1.0
ND2 A:ASN104 4.6 34.1 1.0
C A:SER87 4.6 34.0 1.0
C A:CYS91 4.8 34.9 1.0
CB A:ASN104 4.8 32.3 1.0
O A:CYS91 4.8 35.2 1.0
CA A:GLY89 4.8 33.5 1.0
CB A:SER87 4.8 31.6 1.0
CA A:SER87 4.9 31.9 1.0
N A:CYS102 4.9 29.7 1.0

Reference:

P.Sampathkumar, N.Banu, R.Bhosle, J.Bonanno, S.Chamala, S.Chowdhury, A.Fiser, A.Gizzi, A.S.Glenn, J.Hammonds, B.Hillerich, K.Khafizov, J.D.Love, B.Matikainen, Y.Patskovsky, R.Seidel, R.Toro, W.Zencheck, S.C.Almo. Crystal Structure of A Putative Zinc-Binding Dehydrogenase From Sinorhizobium Meliloti 1021 To Be Published.
Page generated: Wed Dec 16 05:16:06 2020

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