Atomistry » Zinc » PDB 4dyu-4ebb » 4e7i
Atomistry »
  Zinc »
    PDB 4dyu-4ebb »
      4e7i »

Zinc in PDB 4e7i: Pfv Intasome Freeze-Trapped Prior to 3'-Processing, Mn-Bound Form (Ui- Mn)

Enzymatic activity of Pfv Intasome Freeze-Trapped Prior to 3'-Processing, Mn-Bound Form (Ui- Mn)

All present enzymatic activity of Pfv Intasome Freeze-Trapped Prior to 3'-Processing, Mn-Bound Form (Ui- Mn):
2.7.7.49; 2.7.7.7; 3.1.26.4;

Protein crystallography data

The structure of Pfv Intasome Freeze-Trapped Prior to 3'-Processing, Mn-Bound Form (Ui- Mn), PDB code: 4e7i was solved by S.Hare, P.Cherepanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.84 / 2.53
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 160.150, 160.150, 124.240, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 21.1

Other elements in 4e7i:

The structure of Pfv Intasome Freeze-Trapped Prior to 3'-Processing, Mn-Bound Form (Ui- Mn) also contains other interesting chemical elements:

Manganese (Mn) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Pfv Intasome Freeze-Trapped Prior to 3'-Processing, Mn-Bound Form (Ui- Mn) (pdb code 4e7i). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Pfv Intasome Freeze-Trapped Prior to 3'-Processing, Mn-Bound Form (Ui- Mn), PDB code: 4e7i:

Zinc binding site 1 out of 1 in 4e7i

Go back to Zinc Binding Sites List in 4e7i
Zinc binding site 1 out of 1 in the Pfv Intasome Freeze-Trapped Prior to 3'-Processing, Mn-Bound Form (Ui- Mn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pfv Intasome Freeze-Trapped Prior to 3'-Processing, Mn-Bound Form (Ui- Mn) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:47.7
occ:1.00
NE2 A:HIS62 2.0 43.2 1.0
ND1 A:HIS66 2.0 38.1 1.0
SG A:CYS99 2.2 44.7 1.0
SG A:CYS96 2.3 50.5 1.0
CE1 A:HIS62 2.8 43.5 1.0
CE1 A:HIS66 2.9 46.6 1.0
CG A:HIS66 3.0 47.5 1.0
CD2 A:HIS62 3.1 42.6 1.0
CB A:CYS96 3.2 37.3 1.0
CB A:CYS99 3.4 43.9 1.0
CB A:HIS66 3.4 37.0 1.0
N A:CYS99 3.8 42.5 1.0
CA A:HIS66 3.9 42.1 1.0
ND1 A:HIS62 4.0 42.6 1.0
NE2 A:HIS66 4.1 46.2 1.0
CA A:CYS99 4.1 49.2 1.0
CD2 A:HIS66 4.1 38.3 1.0
CG A:HIS62 4.2 42.0 1.0
O A:HOH547 4.2 49.9 1.0
C A:HIS66 4.5 44.2 1.0
O A:HIS66 4.6 47.2 1.0
CA A:CYS96 4.6 47.1 1.0
C A:GLN98 4.8 46.0 1.0
CB A:GLN98 4.9 43.6 1.0
OD1 A:ASN63 4.9 50.2 1.0

Reference:

S.Hare, G.N.Maertens, P.Cherepanov. 3'-Processing and Strand Transfer Catalysed By Retroviral Integrase in Crystallo. Embo J. V. 31 3020 2012.
ISSN: ISSN 0261-4189
PubMed: 22580823
DOI: 10.1038/EMBOJ.2012.118
Page generated: Wed Dec 16 05:15:45 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy