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Zinc in PDB 4e5v: Crystal Structure of A Putative Thua-Like Protein (PARMER_02418) From Parabacteroides Merdae Atcc 43184 at 1.75 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Thua-Like Protein (PARMER_02418) From Parabacteroides Merdae Atcc 43184 at 1.75 A Resolution, PDB code: 4e5v was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.83 / 1.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.590, 95.370, 70.600, 90.00, 102.14, 90.00
R / Rfree (%) 14.8 / 17.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Putative Thua-Like Protein (PARMER_02418) From Parabacteroides Merdae Atcc 43184 at 1.75 A Resolution (pdb code 4e5v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Putative Thua-Like Protein (PARMER_02418) From Parabacteroides Merdae Atcc 43184 at 1.75 A Resolution, PDB code: 4e5v:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4e5v

Go back to Zinc Binding Sites List in 4e5v
Zinc binding site 1 out of 2 in the Crystal Structure of A Putative Thua-Like Protein (PARMER_02418) From Parabacteroides Merdae Atcc 43184 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Thua-Like Protein (PARMER_02418) From Parabacteroides Merdae Atcc 43184 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:15.7
occ:1.00
NE2 A:HIS39 2.1 10.5 1.0
NE2 A:HIS116 2.1 14.2 1.0
OE1 A:GLU198 2.1 13.4 1.0
ND1 A:HIS249 2.2 16.3 1.0
O A:HOH700 2.4 21.5 1.0
O2 A:EDO403 2.6 28.5 1.0
CD2 A:HIS39 2.9 11.7 1.0
CD A:GLU198 3.0 23.6 1.0
CD2 A:HIS116 3.1 14.4 1.0
CE1 A:HIS249 3.1 16.2 1.0
CE1 A:HIS116 3.1 14.1 1.0
CE1 A:HIS39 3.2 11.3 1.0
CG A:HIS249 3.2 14.2 1.0
OE2 A:GLU198 3.2 14.7 1.0
CB A:HIS249 3.5 11.1 1.0
C2 A:EDO403 3.9 30.3 1.0
OH A:TYR200 4.1 20.1 1.0
CA A:HIS249 4.1 11.1 1.0
CG A:HIS39 4.1 11.2 1.0
CG A:HIS116 4.2 14.0 1.0
ND1 A:HIS39 4.2 12.4 1.0
ND1 A:HIS116 4.3 15.7 1.0
NE2 A:HIS249 4.3 16.6 1.0
CG A:GLU198 4.3 17.4 1.0
CD2 A:HIS249 4.3 16.7 1.0
CE1 A:TYR200 4.4 15.9 1.0
CZ A:TYR200 4.6 19.0 1.0
O2 A:EDO408 4.7 34.1 1.0
CB A:GLU198 4.8 9.6 1.0
C1 A:EDO403 4.9 27.3 1.0

Zinc binding site 2 out of 2 in 4e5v

Go back to Zinc Binding Sites List in 4e5v
Zinc binding site 2 out of 2 in the Crystal Structure of A Putative Thua-Like Protein (PARMER_02418) From Parabacteroides Merdae Atcc 43184 at 1.75 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Thua-Like Protein (PARMER_02418) From Parabacteroides Merdae Atcc 43184 at 1.75 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:15.6
occ:1.00
OE1 B:GLU198 2.1 13.1 1.0
ND1 B:HIS249 2.1 15.7 1.0
NE2 B:HIS39 2.1 13.9 1.0
NE2 B:HIS116 2.1 13.1 1.0
O B:HOH556 2.4 22.0 1.0
CD2 B:HIS39 2.9 14.1 1.0
CD B:GLU198 3.0 24.4 1.0
CE1 B:HIS249 3.1 15.3 1.0
O1 B:EDO402 3.1 34.7 1.0
CD2 B:HIS116 3.1 14.4 1.0
CE1 B:HIS116 3.1 13.2 1.0
CG B:HIS249 3.2 13.7 1.0
CE1 B:HIS39 3.2 14.3 1.0
OE2 B:GLU198 3.2 13.5 1.0
CB B:HIS249 3.5 11.0 1.0
CA B:HIS249 4.1 10.7 1.0
OH B:TYR200 4.1 18.2 1.0
CG B:HIS39 4.1 14.2 1.0
NE2 B:HIS249 4.2 15.3 1.0
CG B:HIS116 4.3 13.3 1.0
CG B:GLU198 4.3 13.4 1.0
CD2 B:HIS249 4.3 15.0 1.0
ND1 B:HIS116 4.3 14.1 1.0
ND1 B:HIS39 4.3 15.2 1.0
CE1 B:TYR200 4.4 15.1 1.0
C1 B:EDO402 4.4 30.0 1.0
CZ B:TYR200 4.7 17.8 1.0
O B:HOH603 4.8 28.0 1.0
CB B:GLU198 4.8 8.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
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