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Zinc in PDB 4do7: Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) with Bound Zn, Space Group C2

Protein crystallography data

The structure of Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) with Bound Zn, Space Group C2, PDB code: 4do7 was solved by M.W.Vetting, R.Toro, R.Bhosle, S.R.Wasserman, L.L.Morisco, S.Sojitra, R.D.Seidel, B.Hillerich, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, N.F.Al Obaidi, W.D.Zencheck, H.J.Imker, J.A.Gerlt, F.M.Raushel, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.63 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 103.332, 76.728, 82.862, 90.00, 117.67, 90.00
R / Rfree (%) 17.6 / 20.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) with Bound Zn, Space Group C2 (pdb code 4do7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) with Bound Zn, Space Group C2, PDB code: 4do7:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4do7

Go back to Zinc Binding Sites List in 4do7
Zinc binding site 1 out of 2 in the Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) with Bound Zn, Space Group C2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) with Bound Zn, Space Group C2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:33.0
occ:0.57
O A:HOH728 2.1 28.2 1.0
OD1 A:ASP244 2.1 14.8 1.0
NE2 A:HIS11 2.2 20.2 1.0
CD2 A:HIS11 3.0 22.6 1.0
NE2 A:HIS9 3.2 14.8 1.0
CG A:ASP244 3.2 16.3 1.0
CE1 A:HIS11 3.2 26.0 1.0
NE2 A:HIS166 3.5 20.1 1.0
OD2 A:ASP244 3.6 15.2 1.0
CD2 A:HIS9 3.6 16.6 1.0
CE1 A:HIS166 4.0 19.9 1.0
O A:HOH550 4.1 27.6 1.0
O A:HOH551 4.2 19.4 1.0
CG A:HIS11 4.2 18.2 1.0
ND1 A:HIS11 4.3 16.7 1.0
CG2 A:VAL247 4.3 18.1 1.0
CE1 A:HIS9 4.4 14.9 1.0
NH2 A:ARG106 4.4 14.4 1.0
CB A:ASP244 4.5 12.2 1.0
CD2 A:HIS166 4.7 18.7 1.0
NH1 A:ARG106 4.7 16.2 1.0
CB A:VAL247 4.7 14.5 1.0
CA A:ASP244 4.8 11.5 1.0
CG A:HIS9 5.0 11.7 1.0
O A:ASP244 5.0 13.5 1.0

Zinc binding site 2 out of 2 in 4do7

Go back to Zinc Binding Sites List in 4do7
Zinc binding site 2 out of 2 in the Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) with Bound Zn, Space Group C2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) with Bound Zn, Space Group C2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:33.8
occ:0.53
O B:HOH502 2.0 27.8 1.0
OD1 B:ASP244 2.1 14.5 1.0
NE2 B:HIS11 2.1 19.1 1.0
NE2 B:HIS9 3.0 16.9 1.0
CD2 B:HIS11 3.0 20.7 1.0
CG B:ASP244 3.2 19.0 1.0
CE1 B:HIS11 3.2 21.2 1.0
NE2 B:HIS166 3.5 18.1 1.0
CD2 B:HIS9 3.5 17.8 1.0
OD2 B:ASP244 3.7 15.6 1.0
CE1 B:HIS166 3.9 18.6 1.0
CE1 B:HIS9 4.1 16.8 1.0
CG B:HIS11 4.2 17.8 1.0
ND1 B:HIS11 4.3 15.6 1.0
O B:HOH653 4.3 29.7 1.0
NH2 B:ARG106 4.3 13.0 1.0
O B:HOH531 4.4 18.9 1.0
CG2 B:VAL247 4.4 16.1 1.0
CB B:ASP244 4.4 16.4 1.0
NH1 B:ARG106 4.7 14.9 1.0
CD2 B:HIS166 4.7 17.5 1.0
CA B:ASP244 4.8 10.8 1.0
CG B:HIS9 4.8 10.5 1.0
CB B:VAL247 4.8 14.9 1.0
O B:ASP244 4.9 13.5 1.0
CZ B:ARG106 5.0 13.7 1.0

Reference:

M.W.Vetting, R.Toro, R.Bhosle, S.R.Wasserman, L.L.Morisco, S.Sojitra, R.D.Seidel, B.Hillerich, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, N.F.Al Obaidi, W.D.Zencheck, H.J.Imker, J.A.Gerlt, F.M.Raushel, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) with Bound Zn, Space Group C2 To Be Published.
Page generated: Wed Dec 16 05:11:41 2020

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