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Zinc in PDB 4do0: Crystal Structure of Human PHF8 in Complex with Daminozide

Protein crystallography data

The structure of Crystal Structure of Human PHF8 in Complex with Daminozide, PDB code: 4do0 was solved by T.Krojer, M.Daniel, S.S.Ng, L.J.Walport, R.Chowdhury, C.H.Arrowsmith, A.Edwards, C.Bountra, A.Kawamura, S.Muller-Knapp, M.A.Mcdonough, F.Vondelft, C.J.Schofield, U.Oppermann, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 107.29 / 2.55
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 151.734, 151.734, 151.734, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 26.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human PHF8 in Complex with Daminozide (pdb code 4do0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human PHF8 in Complex with Daminozide, PDB code: 4do0:

Zinc binding site 1 out of 1 in 4do0

Go back to Zinc Binding Sites List in 4do0
Zinc binding site 1 out of 1 in the Crystal Structure of Human PHF8 in Complex with Daminozide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human PHF8 in Complex with Daminozide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:41.0
occ:1.00
O A:HOH612 1.9 26.7 1.0
OD1 A:ASP249 2.0 31.9 1.0
N04 A:DZA501 2.1 40.6 1.0
NE2 A:HIS247 2.2 35.0 1.0
O01 A:DZA501 2.2 36.8 1.0
NE2 A:HIS319 2.3 38.8 1.0
N03 A:DZA501 2.8 39.4 1.0
C02 A:DZA501 2.8 38.2 1.0
CG A:ASP249 2.9 34.0 1.0
C05 A:DZA501 2.9 32.3 1.0
C06 A:DZA501 2.9 31.4 1.0
CD2 A:HIS247 3.0 34.4 1.0
CE1 A:HIS319 3.0 36.7 1.0
OD2 A:ASP249 3.1 36.5 1.0
CE1 A:HIS247 3.2 37.0 1.0
CD2 A:HIS319 3.4 39.2 1.0
OH A:TYR257 4.1 39.0 1.0
CG A:HIS247 4.2 37.3 1.0
ND1 A:HIS319 4.2 37.0 1.0
CB A:ASP249 4.3 36.0 1.0
ND1 A:HIS247 4.3 36.8 1.0
C07 A:DZA501 4.3 40.5 1.0
CG A:HIS319 4.4 39.2 1.0
CA A:ASP249 4.7 35.6 1.0
N A:ASP249 4.9 33.8 1.0

Reference:

T.Krojer, M.Daniel, S.S.Ng, L.J.Walport, R.Chowdhury, C.H.Arrowsmith, A.Edwards, C.Bountra, A.Kawamura, S.Muller-Knapp, M.A.Mcdonough, F.Vondelft, C.J.Schofield, U.Oppermann, Structural Genomics Consortium (Sgc). N/A N/A.
Page generated: Wed Dec 16 05:11:38 2020

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