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Zinc in PDB 4db3: 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus.

Enzymatic activity of 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus.

All present enzymatic activity of 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus.:
2.7.1.59;

Protein crystallography data

The structure of 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus., PDB code: 4db3 was solved by G.Minasov, Z.Wawrzak, O.Onopriyenko, T.Skarina, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.45 / 1.95
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 80.400, 80.400, 110.418, 90.00, 90.00, 120.00
R / Rfree (%) 16.8 / 19.8

Other elements in 4db3:

The structure of 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus. also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus. (pdb code 4db3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus., PDB code: 4db3:

Zinc binding site 1 out of 1 in 4db3

Go back to Zinc Binding Sites List in 4db3
Zinc binding site 1 out of 1 in the 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:36.2
occ:1.00
ND1 A:HIS157 2.2 29.7 1.0
SG A:CYS184 2.3 37.8 1.0
SG A:CYS179 2.3 38.0 1.0
SG A:CYS177 2.4 39.0 1.0
CE1 A:HIS157 3.1 33.7 1.0
CB A:CYS177 3.2 39.2 1.0
CB A:CYS184 3.2 34.8 1.0
CG A:HIS157 3.2 29.6 1.0
CB A:CYS179 3.3 38.2 1.0
CB A:HIS157 3.6 31.8 1.0
CA A:HIS157 4.0 32.1 1.0
N A:CYS179 4.2 40.5 1.0
NE2 A:HIS157 4.2 31.2 1.0
CD2 A:HIS157 4.3 30.1 1.0
CA A:CYS179 4.3 39.7 1.0
O A:GLY156 4.4 33.8 1.0
CA A:CYS177 4.6 42.2 1.0
CB A:LYS181 4.6 40.4 1.0
CA A:CYS184 4.7 34.0 1.0
N A:HIS157 4.9 30.7 1.0
C A:HIS157 4.9 32.7 1.0
C A:CYS177 4.9 42.5 1.0
CB A:ASP186 4.9 37.6 1.0
NH2 A:ARG159 4.9 38.7 1.0
N A:LYS181 5.0 40.2 1.0
C A:GLY156 5.0 31.2 1.0

Reference:

G.Minasov, Z.Wawrzak, O.Onopriyenko, T.Skarina, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus. To Be Published.
Page generated: Wed Dec 16 05:10:51 2020

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