Atomistry » Zinc » PDB 4ci2-4csa » 4cn9
Atomistry »
  Zinc »
    PDB 4ci2-4csa »
      4cn9 »

Zinc in PDB 4cn9: Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif

Protein crystallography data

The structure of Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif, PDB code: 4cn9 was solved by M.Gertz, M.H.Suhre, T.Scheibel, C.Steegborn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.559 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.540, 63.070, 122.350, 90.00, 101.83, 90.00
R / Rfree (%) 17.32 / 20.77

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif (pdb code 4cn9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif, PDB code: 4cn9:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 4cn9

Go back to Zinc Binding Sites List in 4cn9
Zinc binding site 1 out of 4 in the Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1448

b:25.9
occ:0.70
OG A:SER64 2.0 24.6 1.0
O A:HOH2011 2.1 27.1 1.0
O A:HOH2010 2.1 19.7 1.0
OD1 A:ASP173 2.1 22.6 1.0
O A:HOH2014 2.1 23.2 1.0
OG A:SER62 2.2 21.8 1.0
CG A:ASP173 3.0 24.6 1.0
HB3 A:SER64 3.0 29.8 1.0
CB A:SER64 3.1 24.8 1.0
HB2 A:SER62 3.2 28.3 1.0
CB A:SER62 3.2 23.6 1.0
OD2 A:ASP173 3.3 24.2 1.0
HB3 A:SER62 3.6 28.3 1.0
HB2 A:SER64 3.6 29.8 1.0
HA3 A:GLY174 3.7 22.6 1.0
H A:SER64 3.8 29.6 1.0
HG13 A:ILE65 3.8 33.5 1.0
OG1 A:THR139 4.0 25.1 1.0
OD2 A:ASP60 4.0 19.5 1.0
OD1 A:ASP60 4.1 19.0 1.0
O A:ASP173 4.1 24.3 1.0
HG1 A:THR139 4.2 30.1 1.0
C A:ASP173 4.2 24.3 1.0
O A:HOH2012 4.2 32.5 1.0
CA A:SER64 4.3 26.2 1.0
N A:GLY174 4.3 20.7 1.0
CA A:GLY174 4.3 18.9 1.0
H A:ASP173 4.3 25.2 1.0
N A:SER64 4.4 24.7 1.0
H A:ILE65 4.4 28.3 1.0
CB A:ASP173 4.4 24.0 1.0
CG A:ASP60 4.5 19.9 1.0
O A:HOH2069 4.5 31.3 1.0
HA2 A:GLY174 4.5 22.6 1.0
CA A:SER62 4.5 20.6 1.0
C A:SER62 4.7 22.8 1.0
CG1 A:ILE65 4.7 27.9 1.0
CA A:ASP173 4.7 22.2 1.0
H A:SER62 4.7 20.5 1.0
H A:GLY174 4.8 24.9 1.0
N A:ILE65 4.8 23.6 1.0
HD12 A:ILE65 4.8 31.2 1.0
C A:SER64 4.9 28.0 1.0
O A:SER62 4.9 22.3 1.0
HG12 A:ILE65 4.9 33.5 1.0
HB3 A:ASP173 4.9 28.8 1.0
N A:ASP173 4.9 21.0 1.0
HB2 A:ASP173 5.0 28.8 1.0

Zinc binding site 2 out of 4 in 4cn9

Go back to Zinc Binding Sites List in 4cn9
Zinc binding site 2 out of 4 in the Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1449

b:33.4
occ:0.50
OE2 A:GLU48 2.0 38.8 1.0
NE2 A:HIS445 2.0 35.1 1.0
OD2 A:ASP50 2.1 37.8 1.0
O A:HOH2004 2.1 38.8 0.7
O A:HOH2003 2.1 36.2 0.7
OD1 A:ASP50 2.2 31.1 1.0
CG A:ASP50 2.4 31.7 1.0
HE1 A:HIS445 2.5 44.6 1.0
CE1 A:HIS445 2.6 37.2 1.0
HG3 A:GLU48 2.9 39.4 1.0
CD A:GLU48 3.0 36.4 1.0
CD2 A:HIS445 3.3 36.7 1.0
CG A:GLU48 3.4 32.8 1.0
HG22 A:THR88 3.5 41.4 1.0
HD2 A:HIS445 3.7 44.0 1.0
ND1 A:HIS445 3.8 36.2 1.0
HG2 A:GLU48 3.8 39.4 1.0
CB A:ASP50 4.0 32.6 1.0
OE1 A:GLU48 4.1 35.0 1.0
HG1 A:THR88 4.1 47.4 1.0
CG A:HIS445 4.2 31.5 1.0
HB2 A:ASP50 4.3 39.2 1.0
HB3 A:ASP50 4.4 39.2 1.0
CG2 A:THR88 4.4 34.5 1.0
HG21 A:THR88 4.5 41.4 1.0
HD1 A:HIS445 4.5 43.4 1.0
HB2 A:GLU48 4.7 35.1 1.0
CB A:GLU48 4.7 29.2 1.0
H A:ASP50 4.8 30.4 1.0
N A:ASP50 4.8 25.3 1.0
HA A:ASP50 4.8 33.0 1.0
CA A:ASP50 4.8 27.5 1.0
OG1 A:THR88 4.8 39.5 1.0
HG23 A:THR88 5.0 41.4 1.0

Zinc binding site 3 out of 4 in 4cn9

Go back to Zinc Binding Sites List in 4cn9
Zinc binding site 3 out of 4 in the Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1448

b:46.5
occ:0.50
OE2 B:GLU48 1.9 50.4 1.0
OD2 B:ASP50 2.0 47.3 1.0
NE2 B:HIS445 2.0 43.2 1.0
O B:HOH2003 2.1 45.1 0.7
OD1 B:ASP50 2.2 43.4 1.0
CG B:ASP50 2.4 43.4 1.0
HE1 B:HIS445 2.6 53.6 1.0
CE1 B:HIS445 2.6 44.7 1.0
CD B:GLU48 3.0 50.4 1.0
HG2 B:GLU48 3.2 54.8 1.0
CD2 B:HIS445 3.3 45.0 1.0
CG B:GLU48 3.4 45.6 1.0
HG3 B:GLU48 3.5 54.8 1.0
HG22 B:THR88 3.6 50.8 1.0
HD2 B:HIS445 3.7 54.0 1.0
ND1 B:HIS445 3.9 42.8 1.0
CB B:ASP50 3.9 39.9 1.0
OE1 B:GLU48 4.0 49.0 1.0
HG1 B:THR88 4.1 47.9 1.0
CG B:HIS445 4.2 41.6 1.0
HB2 B:ASP50 4.3 47.8 1.0
HB3 B:ASP50 4.3 47.8 1.0
CG2 B:THR88 4.5 42.3 1.0
HG21 B:THR88 4.5 50.8 1.0
HD1 B:HIS445 4.6 51.3 1.0
OG1 B:THR88 4.8 39.9 1.0
CA B:ASP50 4.8 38.4 1.0
HA B:ASP50 4.8 46.1 1.0
H B:ASP50 4.8 46.2 1.0
N B:ASP50 4.8 38.5 1.0
CB B:GLU48 4.9 48.8 1.0

Zinc binding site 4 out of 4 in 4cn9

Go back to Zinc Binding Sites List in 4cn9
Zinc binding site 4 out of 4 in the Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of Proximal Thread Matrix Protein 1 (PTMP1) From the Mussel Byssus with Zinc Occupied Midas Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1449

b:30.4
occ:0.70
OG B:SER64 2.1 27.7 1.0
O B:HOH2010 2.1 22.2 1.0
OD1 B:ASP173 2.1 24.2 1.0
O B:HOH2011 2.1 26.8 1.0
O B:HOH2013 2.1 25.8 1.0
OG B:SER62 2.1 26.0 1.0
CG B:ASP173 3.0 25.3 1.0
HB2 B:SER62 3.1 32.0 1.0
CB B:SER62 3.1 26.7 1.0
HB3 B:SER64 3.1 34.5 1.0
CB B:SER64 3.2 28.8 1.0
OD2 B:ASP173 3.4 25.1 1.0
HB3 B:SER62 3.5 32.0 1.0
HG1 B:THR139 3.5 28.2 1.0
HB2 B:SER64 3.7 34.5 1.0
HA3 B:GLY174 3.7 27.4 1.0
HG13 B:ILE65 3.8 36.5 1.0
H B:SER64 3.8 29.6 1.0
OD2 B:ASP60 4.0 23.4 1.0
OG1 B:THR139 4.0 23.5 1.0
O B:ASP173 4.1 28.6 1.0
OD1 B:ASP60 4.1 22.6 1.0
C B:ASP173 4.2 27.4 1.0
O B:HOH2047 4.3 35.4 1.0
CA B:SER64 4.3 29.1 1.0
H B:ASP173 4.3 27.4 1.0
H B:ILE65 4.3 35.1 1.0
N B:GLY174 4.3 21.8 1.0
CA B:GLY174 4.3 22.9 1.0
O B:HOH2012 4.4 29.1 1.0
N B:SER64 4.4 24.7 1.0
CB B:ASP173 4.4 21.9 1.0
CA B:SER62 4.4 22.6 1.0
HA2 B:GLY174 4.5 27.4 1.0
CG B:ASP60 4.5 24.2 1.0
CG1 B:ILE65 4.7 30.4 1.0
H B:SER62 4.7 24.5 1.0
C B:SER62 4.7 27.4 1.0
HD12 B:ILE65 4.7 38.3 1.0
CA B:ASP173 4.7 24.0 1.0
N B:ILE65 4.7 29.3 1.0
H B:GLY174 4.8 26.2 1.0
HG12 B:ILE65 4.9 36.5 1.0
C B:SER64 4.9 29.2 1.0
N B:ASP173 4.9 22.8 1.0
O B:SER62 4.9 21.5 1.0
HB2 B:ASP173 4.9 26.3 1.0
HB3 B:ASP173 5.0 26.3 1.0

Reference:

M.H.Suhre, M.Gertz, C.Steegborn, T.Scheibel. Structural and Functional Features of A Collagen-Binding Matrix Protein From the Mussel Byssus. Nat.Commun. V. 5 3392 2014.
ISSN: ISSN 2041-1723
PubMed: 24569701
DOI: 10.1038/NCOMMS4392
Page generated: Sat Oct 26 20:50:39 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy