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Zinc in PDB 4bjh: Crystal Structure of the Aquifex Reactor Complex Formed By Dihydroorotase (H180A, H232A) with Dihydroorotate and Aspartate Transcarbamoylase with N-(Phosphonacetyl)-L- Aspartate (Pala)

Enzymatic activity of Crystal Structure of the Aquifex Reactor Complex Formed By Dihydroorotase (H180A, H232A) with Dihydroorotate and Aspartate Transcarbamoylase with N-(Phosphonacetyl)-L- Aspartate (Pala)

All present enzymatic activity of Crystal Structure of the Aquifex Reactor Complex Formed By Dihydroorotase (H180A, H232A) with Dihydroorotate and Aspartate Transcarbamoylase with N-(Phosphonacetyl)-L- Aspartate (Pala):
2.1.3.2; 3.5.2.3;

Protein crystallography data

The structure of Crystal Structure of the Aquifex Reactor Complex Formed By Dihydroorotase (H180A, H232A) with Dihydroorotate and Aspartate Transcarbamoylase with N-(Phosphonacetyl)-L- Aspartate (Pala), PDB code: 4bjh was solved by B.F.P.Edwards, P.D.Martin, E.Grimley, A.Vaishnav, R.Fernando, J.S.Brunzelle, M.Cordes, H.G.Evans, D.R.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 77.85 / 2.20
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 157.152, 157.152, 233.244, 90.00, 90.00, 120.00
R / Rfree (%) 16.066 / 20.304

Other elements in 4bjh:

The structure of Crystal Structure of the Aquifex Reactor Complex Formed By Dihydroorotase (H180A, H232A) with Dihydroorotate and Aspartate Transcarbamoylase with N-(Phosphonacetyl)-L- Aspartate (Pala) also contains other interesting chemical elements:

Barium (Ba) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Aquifex Reactor Complex Formed By Dihydroorotase (H180A, H232A) with Dihydroorotate and Aspartate Transcarbamoylase with N-(Phosphonacetyl)-L- Aspartate (Pala) (pdb code 4bjh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Aquifex Reactor Complex Formed By Dihydroorotase (H180A, H232A) with Dihydroorotate and Aspartate Transcarbamoylase with N-(Phosphonacetyl)-L- Aspartate (Pala), PDB code: 4bjh:

Zinc binding site 1 out of 1 in 4bjh

Go back to Zinc Binding Sites List in 4bjh
Zinc binding site 1 out of 1 in the Crystal Structure of the Aquifex Reactor Complex Formed By Dihydroorotase (H180A, H232A) with Dihydroorotate and Aspartate Transcarbamoylase with N-(Phosphonacetyl)-L- Aspartate (Pala)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Aquifex Reactor Complex Formed By Dihydroorotase (H180A, H232A) with Dihydroorotate and Aspartate Transcarbamoylase with N-(Phosphonacetyl)-L- Aspartate (Pala) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn423

b:36.5
occ:1.00
O A:HOH2018 2.0 37.3 1.0
NE2 A:HIS61 2.0 29.0 1.0
NE2 A:HIS63 2.0 26.0 1.0
OD2 A:ASP153 2.1 38.1 1.0
OD1 A:ASP305 2.4 38.2 1.0
CG A:ASP153 2.9 36.3 1.0
CD2 A:HIS61 2.9 26.7 1.0
CD2 A:HIS63 3.0 29.4 1.0
CE1 A:HIS61 3.0 31.1 1.0
CE1 A:HIS63 3.1 26.4 1.0
OD1 A:ASP153 3.1 36.5 1.0
CG A:ASP305 3.1 37.5 1.0
OD2 A:ASP305 3.4 43.0 1.0
CG A:MET93 3.8 29.4 1.0
CG A:HIS61 4.1 31.0 1.0
ND1 A:HIS61 4.1 32.5 1.0
C5 A:DOR425 4.1 42.7 1.0
CG A:HIS63 4.1 29.1 1.0
ND1 A:HIS63 4.1 27.1 1.0
CB A:ASP153 4.3 34.1 1.0
CB A:ASP305 4.4 35.5 1.0
O A:HOH2080 4.5 47.1 1.0
C6 A:DOR425 4.5 42.4 1.0
C4 A:DOR425 4.6 53.0 1.0
SD A:MET93 4.7 34.6 1.0
CB A:MET93 4.7 30.3 1.0
CA A:ASP305 4.7 35.6 1.0
O71 A:DOR425 4.8 45.7 1.0
O4 A:DOR425 4.8 61.5 1.0

Reference:

B.F.Edwards, R.Fernando, P.D.Martin, E.Grimley, M.Cordes, A.Vaishnav, J.S.Brunzelle, H.G.Evans, D.R.Evans. The Mononuclear Metal Center of Type-I Dihydroorotase From Aquifex Aeolicus. Bmc Biochem. V. 14 36 2013.
ISSN: ISSN 1471-2091
PubMed: 24314009
DOI: 10.1186/1471-2091-14-36
Page generated: Wed Dec 16 05:05:25 2020

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