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Zinc in PDB 4b29: Crystal Structures of Dmsp Lyases Rddddp and Rndddqii

Protein crystallography data

The structure of Crystal Structures of Dmsp Lyases Rddddp and Rndddqii, PDB code: 4b29 was solved by J.H.Hehemann, A.Law, L.Redecke, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 102.91 / 1.72
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 145.540, 145.540, 145.540, 90.00, 90.00, 90.00
R / Rfree (%) 16.176 / 17.572

Other elements in 4b29:

The structure of Crystal Structures of Dmsp Lyases Rddddp and Rndddqii also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Bromine (Br) 5 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structures of Dmsp Lyases Rddddp and Rndddqii (pdb code 4b29). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structures of Dmsp Lyases Rddddp and Rndddqii, PDB code: 4b29:

Zinc binding site 1 out of 1 in 4b29

Go back to Zinc Binding Sites List in 4b29
Zinc binding site 1 out of 1 in the Crystal Structures of Dmsp Lyases Rddddp and Rndddqii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structures of Dmsp Lyases Rddddp and Rndddqii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1205

b:14.8
occ:1.00
O4 A:PO41197 1.9 12.4 1.0
OE1 A:GLU133 2.0 13.1 1.0
NE2 A:HIS168 2.0 10.0 1.0
NE2 A:HIS129 2.1 11.7 1.0
CD A:GLU133 2.8 13.9 1.0
CE1 A:HIS168 2.9 11.9 1.0
P A:PO41197 2.9 13.8 1.0
CD2 A:HIS129 3.0 13.5 1.0
CE1 A:HIS129 3.1 10.3 1.0
OE2 A:GLU133 3.1 15.5 1.0
O3 A:PO41197 3.1 15.0 1.0
CD2 A:HIS168 3.1 12.3 1.0
O2 A:PO41197 3.5 14.2 1.0
NE2 A:HIS127 4.0 13.9 1.0
CD2 A:HIS127 4.0 13.1 1.0
ND1 A:HIS168 4.0 11.9 1.0
ND1 A:HIS162 4.1 11.0 1.0
ND1 A:HIS129 4.2 10.2 1.0
CG A:HIS168 4.2 9.7 1.0
CG A:HIS129 4.2 11.5 1.0
CG A:GLU133 4.2 16.5 1.0
CH2 A:TRP183 4.2 13.0 1.0
O1 A:PO41197 4.2 15.8 1.0
CZ3 A:TRP183 4.6 13.1 1.0
CB A:GLU133 4.6 14.1 1.0
CE1 A:TYR135 4.6 11.2 1.0
CE1 A:HIS162 4.9 13.9 1.0
CB A:PRO192 4.9 18.7 1.0
CZ2 A:TRP183 4.9 13.5 1.0

Reference:

J.H.Hehemann, A.Law, L.Redecke, A.B.Boraston. Crystal Structures of Dmsp Lyases Rddddp and Rndddqii To Be Published.
Page generated: Wed Dec 16 05:04:22 2020

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