Zinc in PDB 4avx: Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Bound to An IP2 Compound at 1.68 A Resolution

The structure of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Bound to An IP2 Compound at 1.68 A Resolution, PDB code: 4avx was solved by E.Williams, P.Canning, L.Shrestha, T.Krojer, M.Vollmar, A.Slowey, S.Conway, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, A.Bullock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.83 / 1.68
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	27.825, 67.545, 57.423, 90.00, 103.51, 90.00
R / Rfree (%)	18.1 / 23.1

The binding sites of Zinc atom in the Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Bound to An IP2 Compound at 1.68 A Resolution (pdb code 4avx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Bound to An IP2 Compound at 1.68 A Resolution, PDB code: 4avx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Bound to An IP2 Compound at 1.68 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Bound to An IP2 Compound at 1.68 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1225 b:13.0 occ:1.00 SG A:CYS215 2.3 13.9 1.0 SG A:CYS182 2.3 10.2 1.0 SG A:CYS185 2.4 13.4 1.0 SG A:CYS212 2.4 15.1 1.0 CB A:CYS215 3.1 11.3 1.0 CB A:CYS182 3.2 9.0 1.0 CB A:CYS185 3.3 12.2 1.0 CB A:CYS212 3.5 16.1 1.0 N A:CYS185 3.7 10.3 1.0 N A:CYS212 3.9 12.1 1.0 CA A:CYS185 4.1 11.2 1.0 C2 A:EDO1229 4.2 37.7 1.0 CA A:CYS212 4.3 13.3 1.0 N A:CYS215 4.3 19.5 1.0 CA A:CYS215 4.3 16.9 1.0 O2 A:EDO1229 4.4 41.7 1.0 CE1 A:PHE189 4.5 15.2 1.0 O A:HOH2140 4.5 22.3 1.0 CB A:ALA184 4.5 10.1 1.0 CZ A:PHE189 4.6 16.3 1.0 CA A:CYS182 4.6 12.3 1.0 C A:ALA184 4.6 11.0 1.0 CA A:ALA184 4.9 12.6 1.0 O A:CYS212 4.9 14.6 1.0 C A:CYS212 4.9 14.9 1.0 N A:ALA184 4.9 9.5 1.0 C A:CYS182 5.0 12.8 1.0 C A:CYS185 5.0 12.9 1.0

Zinc binding site 2 out of 2 in the Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Bound to An IP2 Compound at 1.68 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Bound to An IP2 Compound at 1.68 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1226 b:21.7 occ:1.00 SG A:CYS193 2.3 22.6 1.0 SG A:CYS169 2.3 23.5 1.0 SG A:CYS166 2.4 19.1 1.0 SG A:CYS190 2.4 18.3 1.0 CB A:CYS193 3.1 16.0 1.0 CB A:CYS166 3.3 17.6 1.0 CB A:CYS169 3.4 28.0 1.0 CB A:CYS190 3.5 16.1 1.0 N A:CYS169 3.7 31.9 1.0 N A:CYS190 4.0 12.0 1.0 CA A:CYS169 4.1 35.1 1.0 CA A:CYS190 4.3 13.7 1.0 N A:CYS193 4.3 16.0 1.0 CA A:CYS193 4.3 15.4 1.0 CG1 A:VAL171 4.4 28.9 1.0 CB A:ARG168 4.6 25.6 1.0 CA A:CYS166 4.7 21.3 1.0 C A:CYS169 4.8 28.4 1.0 O A:CYS190 4.8 13.9 1.0 C A:CYS190 4.8 14.8 1.0 C A:ARG168 4.8 33.2 1.0 N A:ARG170 4.9 29.5 1.0 CG A:ARG168 5.0 28.4 1.0

E.Williams, P.Canning, L.Shrestha, T.Krojer, M.Vollmar, A.Slowey, S.Conway, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, A.Bullock. Crystal Structure of the Tandem Vhs and Fyve Domains of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Bound to An IP2 Compound at 1.68 A Resolution To Be Published.