Zinc in PDB 3zbw: Crystal Structure of Murine Angiogenin-3

The structure of Crystal Structure of Murine Angiogenin-3, PDB code: 3zbw was solved by S.Iyer, D.E.Holloway, K.R.Acharya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.679 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	28.196, 95.673, 41.669, 90.00, 100.99, 90.00
R / Rfree (%)	16.5 / 22.6

The binding sites of Zinc atom in the Crystal Structure of Murine Angiogenin-3 (pdb code 3zbw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Murine Angiogenin-3, PDB code: 3zbw:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Murine Angiogenin-3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Murine Angiogenin-3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1124 b:55.8 occ:1.00 O A:HOH2116 2.7 27.9 1.0 OH A:TYR14 2.8 15.0 1.0 N A:LYS50 3.4 9.3 1.0 O A:HOH2057 3.7 12.9 1.0 CA A:THR49 3.7 12.7 1.0 CE A:LYS50 3.8 23.6 1.0 CZ A:TYR14 3.9 13.6 1.0 CB A:THR49 3.9 11.9 1.0 CG A:LYS50 4.0 11.5 1.0 C A:THR49 4.1 12.1 1.0 CE1 A:TYR14 4.2 11.7 1.0 CB A:LYS50 4.3 10.5 1.0 CG2 A:THR49 4.3 9.9 1.0 CA A:LYS50 4.5 13.1 1.0 CD A:LYS50 4.6 16.0 1.0 CB B:ALA16 4.7 12.2 1.0 CB A:ALA16 4.8 14.5 1.0 O A:ASP48 4.9 14.3 1.0 O A:HOH2059 4.9 28.3 1.0 N A:THR49 4.9 11.5 1.0 NZ A:LYS50 5.0 22.6 1.0 CE2 A:TYR14 5.0 13.4 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Murine Angiogenin-3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Murine Angiogenin-3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1125 b:33.9 occ:1.00 ND1 A:HIS82 2.3 19.9 1.0 O A:HOH2052 2.6 29.4 1.0 OE1 A:GLU41 2.6 35.5 1.0 OXT A:ACY1122 2.6 32.4 1.0 O A:HOH2087 2.7 24.2 1.0 CG A:HIS82 3.1 19.4 1.0 OE2 A:GLU41 3.3 29.9 1.0 CB A:HIS82 3.3 18.7 1.0 CD A:GLU41 3.3 28.3 1.0 CE1 A:HIS82 3.3 22.0 1.0 C A:HIS82 3.6 19.0 1.0 O A:HIS82 3.6 17.8 1.0 C A:ACY1122 3.7 37.9 1.0 O A:HOH2115 3.9 24.9 1.0 N A:LYS83 3.9 19.9 1.0 CA A:HIS82 4.1 19.5 1.0 CA A:LYS83 4.3 19.8 1.0 CH3 A:ACY1122 4.3 28.3 1.0 CD2 A:HIS82 4.3 21.3 1.0 NE2 A:HIS82 4.4 24.1 1.0 N A:GLY85 4.4 23.4 1.0 C A:LYS83 4.5 24.1 1.0 O A:ACY1122 4.6 35.7 1.0 CA A:GLY85 4.6 25.2 1.0 O A:LYS83 4.7 22.8 1.0 CG A:GLU41 4.8 26.1 1.0

S.Iyer, D.E.Holloway, K.R.Acharya. Crystal Structures of Murine Angiogenin-2 and -3 - Probing 'Structure - Function' Relationships Amongst Angiogenin Homologues. Febs J. V. 280 302 2013.
ISSN: ISSN 1742-464X
PubMed: 23170778
DOI: 10.1111/FEBS.12071