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Zinc in PDB 3ux8: Crystal Structure of Uvra

Protein crystallography data

The structure of Crystal Structure of Uvra, PDB code: 3ux8 was solved by M.A.Samuels, D.Pakotiprapha, D.Jeruzalmi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.08 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 128.653, 51.330, 112.395, 90.00, 97.27, 90.00
R / Rfree (%) 21.1 / 24.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Uvra (pdb code 3ux8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Uvra, PDB code: 3ux8:

Zinc binding site 1 out of 1 in 3ux8

Go back to Zinc Binding Sites List in 3ux8
Zinc binding site 1 out of 1 in the Crystal Structure of Uvra


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Uvra within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:43.4
occ:1.00
SG A:CYS762 2.3 39.3 1.0
SG A:CYS736 2.4 43.4 1.0
SG A:CYS739 2.4 46.0 1.0
SG A:CYS759 2.5 50.0 1.0
CB A:CYS736 3.1 41.5 1.0
CB A:CYS759 3.1 50.5 1.0
CB A:CYS762 3.2 39.5 1.0
CB A:CYS739 3.3 48.9 1.0
N A:CYS762 3.6 44.9 1.0
N A:CYS739 3.8 51.9 1.0
CA A:CYS762 4.0 42.2 1.0
CA A:CYS739 4.2 51.0 1.0
CA A:CYS736 4.4 42.7 1.0
O A:CYS736 4.6 44.6 1.0
CB A:ALA738 4.6 55.1 1.0
CA A:CYS759 4.6 52.7 1.0
CB A:VAL761 4.6 50.2 1.0
C A:CYS736 4.7 44.8 1.0
C A:ALA738 4.7 54.8 1.0
C A:VAL761 4.7 47.5 1.0
CA A:GLY743 4.8 51.3 1.0
C A:CYS762 4.8 41.5 1.0
N A:GLY743 4.9 48.7 1.0
N A:ALA738 4.9 52.7 1.0
CA A:ALA738 5.0 54.8 1.0

Reference:

D.Pakotiprapha, M.Samuels, K.Shen, J.H.Hu, D.Jeruzalmi. Structure and Mechanism of the Uvra-Uvrb Dna Damage Sensor. Nat.Struct.Mol.Biol. V. 19 291 2012.
ISSN: ISSN 1545-9993
PubMed: 22307053
DOI: 10.1038/NSMB.2240
Page generated: Sat Oct 26 17:30:55 2024

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