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Zinc in PDB 3u7l: Crystal Structures of the Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors

Enzymatic activity of Crystal Structures of the Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors

All present enzymatic activity of Crystal Structures of the Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors:
3.5.1.88;

Protein crystallography data

The structure of Crystal Structures of the Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors, PDB code: 3u7l was solved by S.J.Lee, S.-J.Lee, S.K.Lee, H.-J.Yoon, H.H.Lee, K.K.Kim, B.J.Lee, S.W.Suh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.01
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 94.781, 120.209, 47.786, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 23.6

Other elements in 3u7l:

The structure of Crystal Structures of the Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structures of the Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors (pdb code 3u7l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structures of the Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors, PDB code: 3u7l:

Zinc binding site 1 out of 1 in 3u7l

Go back to Zinc Binding Sites List in 3u7l
Zinc binding site 1 out of 1 in the Crystal Structures of the Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structures of the Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn350

b:35.4
occ:1.00
NE2 A:HIS154 2.1 14.3 1.0
OAX A:UDB192 2.2 21.0 1.0
NE2 A:HIS158 2.3 14.8 1.0
SG A:CSD111 2.3 19.8 1.0
CD2 A:HIS154 2.9 13.9 1.0
NAW A:UDB192 2.9 22.6 1.0
OAV A:UDB192 3.1 25.2 1.0
OD2 A:CSD111 3.1 27.7 1.0
OD1 A:CSD111 3.2 27.1 1.0
CE1 A:HIS158 3.2 15.5 1.0
CE1 A:HIS154 3.2 12.9 1.0
CD2 A:HIS158 3.3 14.3 1.0
CAU A:UDB192 3.3 25.5 1.0
NE2 A:GLN65 3.3 16.0 1.0
CB A:CSD111 3.4 21.1 1.0
O A:HOH237 3.5 18.6 1.0
CA A:CSD111 3.8 21.1 1.0
CD A:GLN65 4.1 17.3 1.0
CG A:HIS154 4.1 14.3 1.0
ND1 A:HIS154 4.2 13.3 1.0
ND1 A:HIS158 4.3 14.9 1.0
OE1 A:GLN65 4.4 19.0 1.0
CG A:HIS158 4.4 14.7 1.0
N A:LEU112 4.4 22.3 1.0
O A:HOH206 4.5 15.9 1.0
O A:GLY110 4.5 20.9 1.0
C A:CSD111 4.6 21.6 1.0
CAT A:UDB192 4.7 26.6 1.0
OE1 A:GLU155 4.7 18.8 1.0
OE2 A:GLU155 4.8 19.5 1.0
CAY A:UDB192 4.8 28.0 1.0
N A:CSD111 5.0 20.4 1.0

Reference:

S.J.Lee, S.-J.Lee, S.K.Lee, H.-J.Yoon, H.H.Lee, K.K.Kim, B.J.Lee, B.I.Lee, S.W.Suh. Structures of Staphylococcus Aureus Peptide Deformylase in Complex with Two Classes of New Inhibitors Acta Crystallogr.,Sect.D V. 68 784 2012.
ISSN: ISSN 0907-4449
PubMed: 22751663
DOI: 10.1107/S0907444912011912
Page generated: Wed Dec 16 04:53:45 2020

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