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Zinc in PDB 3u24: The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.

Protein crystallography data

The structure of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis., PDB code: 3u24 was solved by M.E.Cuff, C.Hatzos-Skintges, J.Bearden, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.37 / 2.25
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 96.427, 96.427, 133.947, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 20

Other elements in 3u24:

The structure of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Zinc atom in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. (pdb code 3u24). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 11 binding sites of Zinc where determined in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis., PDB code: 3u24:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 11 in 3u24

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Zinc binding site 1 out of 11 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:65.1
occ:1.00
O A:HOH955 1.9 34.9 1.0
OE2 A:GLU150 2.1 45.3 1.0
NE2 A:HIS67 2.2 41.0 1.0
O A:HOH945 2.3 36.2 1.0
O A:HOH954 2.5 50.7 1.0
CD A:GLU150 2.8 39.1 1.0
OE1 A:GLU150 2.9 37.0 1.0
CE1 A:HIS67 3.1 37.2 1.0
CD2 A:HIS67 3.2 38.2 1.0
CG A:GLU150 4.3 35.0 1.0
ND1 A:HIS67 4.3 38.2 1.0
CG A:HIS67 4.3 37.5 1.0
O A:GLY65 4.4 34.6 1.0
CA A:GLY65 4.7 29.4 1.0
C A:GLY65 4.7 31.2 1.0
CZ A:PHE152 4.8 34.2 1.0

Zinc binding site 2 out of 11 in 3u24

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Zinc binding site 2 out of 11 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn592

b:33.3
occ:1.00
NE2 A:HIS112 2.0 25.5 1.0
O A:HOH754 2.5 32.4 1.0
CE1 A:HIS112 3.0 25.4 1.0
CD2 A:HIS112 3.0 24.0 1.0
ND1 A:HIS112 4.1 24.9 1.0
CG A:HIS112 4.1 23.4 1.0
CD2 A:LEU100 4.5 40.7 1.0
CD1 A:LEU100 4.7 42.7 1.0

Zinc binding site 3 out of 11 in 3u24

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Zinc binding site 3 out of 11 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn593

b:49.1
occ:1.00
OE1 A:GLU591 2.0 50.6 1.0
O A:HOH947 2.0 36.7 1.0
CD A:GLU591 2.6 54.8 1.0
OE2 A:GLU591 2.6 52.0 1.0
O A:HOH753 2.7 43.7 1.0
CG A:GLU591 4.1 53.7 1.0
CD2 A:LEU588 4.2 31.2 1.0
CB A:GLU591 4.8 50.6 1.0

Zinc binding site 4 out of 11 in 3u24

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Zinc binding site 4 out of 11 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn594

b:33.2
occ:1.00
O A:ACY597 1.8 44.0 1.0
NE2 A:HIS330 1.9 29.5 1.0
OE2 A:GLU410 2.1 26.8 1.0
OE1 A:GLU410 2.5 25.0 1.0
CD A:GLU410 2.6 26.2 1.0
CE1 A:HIS330 2.9 28.7 1.0
C A:ACY597 2.9 56.4 1.0
CD2 A:HIS330 2.9 27.1 1.0
OXT A:ACY597 3.3 58.2 1.0
ND1 A:HIS330 4.0 27.6 1.0
CG A:HIS330 4.1 26.6 1.0
CG A:GLU410 4.1 27.4 1.0
O A:THR328 4.2 26.0 1.0
CH3 A:ACY597 4.2 54.5 1.0
NE A:ARG414 4.4 31.3 1.0
NH2 A:ARG414 4.6 30.7 1.0
O A:HOH731 4.8 30.6 1.0
C A:THR328 4.9 25.6 1.0
CA A:THR328 4.9 25.9 1.0
CZ A:ARG414 5.0 30.3 1.0

Zinc binding site 5 out of 11 in 3u24

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Zinc binding site 5 out of 11 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn595

b:22.4
occ:1.00
NE2 A:HIS427 1.9 18.8 1.0
O A:HOH944 2.1 27.3 1.0
NE2 A:HIS433 2.1 20.0 1.0
OE1 A:GLU458 2.1 24.6 1.0
OE2 A:GLU458 2.4 26.8 1.0
CD A:GLU458 2.6 25.4 1.0
CE1 A:HIS427 2.8 19.5 1.0
CD2 A:HIS427 2.9 20.0 1.0
CD2 A:HIS433 3.1 19.7 1.0
CE1 A:HIS433 3.1 19.9 1.0
OE2 A:GLU428 4.0 35.7 1.0
ND1 A:HIS427 4.0 19.7 1.0
CG A:HIS427 4.1 19.6 1.0
CG A:GLU458 4.1 24.1 1.0
CB A:ALA461 4.2 19.7 1.0
ND1 A:HIS433 4.2 20.7 1.0
CG A:HIS433 4.3 20.1 1.0
CA A:GLU458 4.8 21.9 1.0
CD A:GLU428 4.8 32.1 1.0
CB A:GLU458 4.8 22.7 1.0

Zinc binding site 6 out of 11 in 3u24

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Zinc binding site 6 out of 11 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn596

b:55.2
occ:1.00
NE2 A:HIS418 2.1 28.2 1.0
O A:HOH936 2.2 40.0 1.0
O A:HOH946 2.2 35.4 1.0
CD2 A:HIS418 3.0 25.8 1.0
CE1 A:HIS418 3.0 27.3 1.0
ND1 A:HIS418 4.2 27.2 1.0
OE1 A:GLU477 4.2 47.8 1.0
CG A:HIS418 4.2 25.8 1.0
NE2 A:GLN422 4.3 22.3 1.0
O A:HOH921 4.4 40.0 1.0
OE2 A:GLU477 4.5 50.0 1.0
NE1 A:TRP419 4.6 25.6 1.0
CD A:GLU477 4.8 44.1 1.0
O A:HOH850 4.9 46.4 1.0
O A:HOH935 5.0 46.9 1.0

Zinc binding site 7 out of 11 in 3u24

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Zinc binding site 7 out of 11 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn606

b:86.6
occ:1.00
OD1 A:ASP52 2.3 35.0 1.0
O A:HOH952 2.3 47.7 1.0
O A:HOH953 2.6 49.2 1.0
O A:HOH951 3.0 46.0 1.0
CG A:ASP52 3.2 31.8 1.0
OD2 A:ASP52 3.4 35.6 1.0
O A:HOH896 3.7 51.6 1.0
O A:HOH747 4.2 39.8 1.0
CB A:ASP52 4.6 29.0 1.0
O A:ALA48 4.8 23.7 1.0
OE1 A:GLN55 4.8 62.8 1.0
CA A:ASP52 4.9 26.9 1.0

Zinc binding site 8 out of 11 in 3u24

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Zinc binding site 8 out of 11 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2

b:83.7
occ:1.00
O A:HOH972 2.2 33.8 1.0
ND1 A:HIS418 2.4 27.2 1.0
O A:HOH937 2.7 40.6 1.0
O A:HOH373 3.3 66.4 1.0
CE1 A:HIS418 3.3 27.3 1.0
CG A:HIS418 3.5 25.8 1.0
O A:HOH973 3.5 36.8 1.0
CB A:HIS418 3.8 24.6 1.0
CA A:HIS418 4.0 24.1 1.0
N A:VAL331 4.3 26.4 1.0
NE2 A:HIS418 4.5 28.2 1.0
C A:HIS330 4.6 25.9 1.0
CA A:VAL331 4.6 28.3 1.0
CD2 A:HIS418 4.6 25.8 1.0
O A:HOH850 4.7 46.4 1.0
O A:HOH852 4.7 22.7 1.0
CB A:VAL331 4.8 27.9 1.0
O A:HIS418 4.8 24.3 1.0
C A:HIS418 4.9 24.1 1.0
CD A:GLU339 4.9 31.6 1.0
OE2 A:GLU339 5.0 34.6 1.0
O A:HIS330 5.0 26.2 1.0
CA A:HIS330 5.0 24.8 1.0

Zinc binding site 9 out of 11 in 3u24

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Zinc binding site 9 out of 11 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn3

b:0.2
occ:1.00
O A:HOH373 2.3 66.4 1.0
O A:HOH935 2.6 46.9 1.0
OE2 A:GLU339 2.6 34.6 1.0
O A:HOH971 2.9 47.8 1.0
NZ A:LYS342 3.4 56.8 1.0
CD A:GLU339 3.6 31.6 1.0
OE1 A:GLU339 3.8 33.9 1.0
OE1 A:GLU346 4.3 49.7 1.0
O A:HOH687 4.3 55.8 1.0
NE2 A:GLN343 4.5 30.0 1.0
CE A:LYS342 4.5 53.9 1.0
O A:HOH973 4.7 36.8 1.0
OE2 A:GLU346 4.8 53.9 1.0
CG A:GLN343 4.8 29.6 1.0
CD A:LYS342 4.8 49.1 1.0
CG A:GLU339 4.9 29.2 1.0
CD A:GLU346 5.0 47.1 1.0
CE1 A:HIS418 5.0 27.3 1.0

Zinc binding site 10 out of 11 in 3u24

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Zinc binding site 10 out of 11 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn4

b:78.7
occ:1.00
OE1 A:GLU78 2.5 48.5 1.0
O A:HOH966 2.6 55.6 1.0
O A:HOH931 2.8 45.5 1.0
OE2 A:GLU78 2.9 49.6 1.0
CD A:GLU78 3.0 42.7 1.0
CG A:GLU78 4.5 37.0 1.0
O A:HOH620 4.6 32.1 1.0

Reference:

M.E.Cuff, C.Hatzos-Skintges, J.Bearden, A.Joachimiak. The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. To Be Published.
Page generated: Wed Dec 16 04:53:17 2020

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