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Zinc in PDB 3u04: Crystal Structure of Peptide Deformylase From Ehrlichia Chaffeensis in Complex with Actinonin

Enzymatic activity of Crystal Structure of Peptide Deformylase From Ehrlichia Chaffeensis in Complex with Actinonin

All present enzymatic activity of Crystal Structure of Peptide Deformylase From Ehrlichia Chaffeensis in Complex with Actinonin:
3.5.1.88;

Protein crystallography data

The structure of Crystal Structure of Peptide Deformylase From Ehrlichia Chaffeensis in Complex with Actinonin, PDB code: 3u04 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.94 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 83.890, 33.020, 68.140, 90.00, 91.17, 90.00
R / Rfree (%) 17 / 19.8

Other elements in 3u04:

The structure of Crystal Structure of Peptide Deformylase From Ehrlichia Chaffeensis in Complex with Actinonin also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Peptide Deformylase From Ehrlichia Chaffeensis in Complex with Actinonin (pdb code 3u04). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Peptide Deformylase From Ehrlichia Chaffeensis in Complex with Actinonin, PDB code: 3u04:

Zinc binding site 1 out of 1 in 3u04

Go back to Zinc Binding Sites List in 3u04
Zinc binding site 1 out of 1 in the Crystal Structure of Peptide Deformylase From Ehrlichia Chaffeensis in Complex with Actinonin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Peptide Deformylase From Ehrlichia Chaffeensis in Complex with Actinonin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:17.0
occ:1.00
NE2 A:HIS153 2.1 13.1 1.0
O4 A:BB2210 2.1 18.6 1.0
NE2 A:HIS157 2.1 13.9 1.0
O2 A:BB2210 2.3 17.0 1.0
SG A:CYS111 2.3 15.1 1.0
C3 A:BB2210 2.8 18.5 1.0
N1 A:BB2210 2.9 17.9 1.0
CD2 A:HIS153 3.0 13.3 1.0
CE1 A:HIS157 3.1 14.2 1.0
CD2 A:HIS157 3.1 13.6 1.0
CE1 A:HIS153 3.1 13.7 1.0
NE2 A:GLN51 3.4 17.7 1.0
CB A:CYS111 3.4 16.1 1.0
O A:HOH192 3.5 13.9 1.0
CA A:CYS111 3.8 16.2 1.0
CD A:GLN51 4.0 17.2 1.0
OE1 A:GLN51 4.1 16.4 1.0
CG A:HIS153 4.2 12.3 1.0
N A:LEU112 4.2 17.4 1.0
C5 A:BB2210 4.2 18.9 1.0
ND1 A:HIS153 4.2 13.1 1.0
ND1 A:HIS157 4.3 14.3 1.0
CG A:HIS157 4.3 13.8 1.0
C A:CYS111 4.5 17.1 1.0
C6 A:BB2210 4.5 19.9 1.0
O A:HOH189 4.6 13.0 1.0
OE1 A:GLU154 4.8 17.3 1.0
O A:GLY110 4.9 15.7 1.0
N A:SER113 5.0 17.4 1.0

Reference:

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), J.Abendroth, M.C.Clifton, T.E.Edwards, B.L.Staker. Crystal Structure of Peptide Deformylase From Ehrlichia Chaffeensis in Complex with Actinonin To Be Published.
Page generated: Wed Dec 16 04:53:12 2020

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