Zinc in PDB 3tc8: Crystal Structure of A Zn-Dependent Exopeptidase (BDI_3547) From Parabacteroides Distasonis Atcc 8503 at 1.06 A Resolution

The structure of Crystal Structure of A Zn-Dependent Exopeptidase (BDI_3547) From Parabacteroides Distasonis Atcc 8503 at 1.06 A Resolution, PDB code: 3tc8 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.38 / 1.06
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	44.662, 51.277, 72.985, 105.74, 99.92, 97.46
R / Rfree (%)	11.2 / 13.2

The binding sites of Zinc atom in the Crystal Structure of A Zn-Dependent Exopeptidase (BDI_3547) From Parabacteroides Distasonis Atcc 8503 at 1.06 A Resolution (pdb code 3tc8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Zn-Dependent Exopeptidase (BDI_3547) From Parabacteroides Distasonis Atcc 8503 at 1.06 A Resolution, PDB code: 3tc8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A Zn-Dependent Exopeptidase (BDI_3547) From Parabacteroides Distasonis Atcc 8503 at 1.06 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Zn-Dependent Exopeptidase (BDI_3547) From Parabacteroides Distasonis Atcc 8503 at 1.06 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn350 b:10.1 occ:0.23 OD2 A:ASP180 1.9 13.0 1.0 OD2 A:ASP147 2.0 12.8 1.0 NE2 A:HIS301 2.1 11.5 1.0 O A:HOH1247 2.2 12.9 0.5 O2 A:EDO401 2.2 28.5 1.0 CG A:ASP180 2.5 10.7 1.0 OD1 A:ASP180 2.5 15.2 1.0 CG A:ASP147 2.8 9.5 1.0 OD1 A:ASP147 3.0 10.4 1.0 CD2 A:HIS301 3.0 10.4 1.0 CE1 A:HIS301 3.1 10.3 1.0 O A:HOH1062 3.1 25.2 1.0 O A:HOH1247 3.5 21.2 0.5 C2 A:EDO401 3.5 31.0 1.0 NE1 A:TRP300 3.7 12.4 1.0 CB A:ASP180 3.9 9.3 1.0 O A:HOH444 4.1 12.2 1.0 CB A:ASP147 4.1 8.8 1.0 CG A:HIS301 4.2 9.3 1.0 ND1 A:HIS301 4.2 10.7 1.0 CD1 A:TRP300 4.3 11.4 1.0 OE1 A:GLU179 4.4 15.8 1.0 O A:HOH445 4.4 11.7 1.0 O1 A:EDO401 4.6 38.3 1.0 C1 A:EDO401 4.6 33.0 1.0 CE2 A:TRP300 4.7 11.6 1.0 CD A:ARG126 4.7 8.7 1.0 NE2 A:HIS122 4.8 9.1 1.0 CA A:ASP180 4.9 8.4 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A Zn-Dependent Exopeptidase (BDI_3547) From Parabacteroides Distasonis Atcc 8503 at 1.06 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Zn-Dependent Exopeptidase (BDI_3547) From Parabacteroides Distasonis Atcc 8503 at 1.06 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn350 b:10.7 occ:0.22 OD2 B:ASP180 1.8 13.3 1.0 OD2 B:ASP147 2.0 12.3 1.0 NE2 B:HIS301 2.1 10.9 1.0 O2 B:EDO400 2.2 28.5 1.0 O B:HOH1383 2.2 12.7 0.5 CG B:ASP180 2.5 11.1 1.0 OD1 B:ASP180 2.5 15.2 1.0 CG B:ASP147 2.8 9.3 1.0 O B:HOH1301 3.0 25.6 1.0 OD1 B:ASP147 3.0 10.4 1.0 CD2 B:HIS301 3.0 10.3 1.0 CE1 B:HIS301 3.1 10.8 1.0 C2 B:EDO400 3.5 30.1 1.0 O B:HOH1383 3.6 24.0 0.5 NE1 B:TRP300 3.6 12.2 1.0 CB B:ASP180 3.9 9.9 1.0 O B:HOH471 4.1 12.2 1.0 CB B:ASP147 4.1 9.4 1.0 CG B:HIS301 4.2 9.3 1.0 ND1 B:HIS301 4.2 11.5 1.0 CD1 B:TRP300 4.2 12.0 1.0 OE1 B:GLU179 4.3 15.8 1.0 O B:HOH476 4.4 11.4 1.0 CE2 B:TRP300 4.6 11.8 1.0 C1 B:EDO400 4.6 32.0 1.0 CD B:ARG126 4.7 8.3 1.0 NE2 B:HIS122 4.9 8.6 1.0 O1 B:EDO400 4.9 35.2 1.0 CA B:ASP180 5.0 8.9 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.