Zinc in PDB 3sxk: ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator

The structure of ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator, PDB code: 3sxk was solved by G.P.Czelakowski, Z.S.Derewenda, Integrated Center For Structure Andfunction Innovation (Isfi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.92 / 1.63
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.697, 79.977, 49.223, 90.00, 115.08, 90.00
R / Rfree (%)	17 / 19.2

The binding sites of Zinc atom in the ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator (pdb code 3sxk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator, PDB code: 3sxk:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn4 b:17.6 occ:1.00 NE2 A:HIS174 2.0 16.3 1.0 O3 A:SO41 2.1 21.2 1.0 NE2 A:HIS134 2.1 12.0 1.0 NE2 A:HIS196 2.1 16.6 1.0 OD1 A:ASP130 2.7 22.2 1.0 CE1 A:HIS196 2.9 16.0 1.0 CE1 A:HIS174 2.9 19.4 1.0 HE1 A:HIS196 3.0 19.2 1.0 CE1 A:HIS134 3.0 18.1 1.0 CD2 A:HIS134 3.1 16.1 1.0 CD2 A:HIS174 3.1 15.9 1.0 HE1 A:HIS174 3.1 23.3 1.0 S A:SO41 3.2 28.5 1.0 HE1 A:HIS134 3.2 21.7 1.0 HD2 A:HIS134 3.3 19.3 1.0 CD2 A:HIS196 3.3 17.1 1.0 HD2 A:HIS174 3.3 19.1 1.0 O1 A:SO41 3.5 23.1 1.0 HD2 A:HIS196 3.5 20.5 1.0 CG A:ASP130 3.9 21.1 1.0 O2 A:SO41 3.9 41.9 1.0 HH22 A:ARG86 3.9 17.9 1.0 ND1 A:HIS174 4.1 18.4 1.0 ND1 A:HIS196 4.1 16.1 1.0 ND1 A:HIS134 4.1 16.2 1.0 CG A:HIS174 4.2 14.5 1.0 CG A:HIS134 4.2 14.5 1.0 HB3 A:SER170 4.2 21.0 1.0 CG A:HIS196 4.3 15.3 1.0 O4 A:SO41 4.4 29.7 1.0 HE1 A:PHE126 4.5 29.5 1.0 OD2 A:ASP130 4.5 26.6 1.0 HG21 A:VAL200 4.6 19.7 1.0 NH2 A:ARG86 4.6 15.0 1.0 HA A:ASP130 4.7 18.6 1.0 HD23 A:LEU133 4.7 22.7 1.0 HD23 A:LEU197 4.7 26.7 1.0 HD21 A:LEU197 4.8 26.7 1.0 HZ A:PHE126 4.8 37.8 1.0 HD1 A:HIS196 4.8 19.3 1.0 HD1 A:HIS174 4.9 22.1 1.0 HB2 A:ASP130 4.9 23.5 1.0 HH21 A:ARG86 4.9 17.9 1.0 CB A:ASP130 4.9 19.6 1.0 HD1 A:HIS134 4.9 19.4 1.0

Zinc binding site 2 out of 4 in the ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6 b:23.8 occ:1.00 NE2 A:HIS162 2.0 19.6 1.0 O A:HOH268 2.2 35.7 1.0 O A:HOH220 2.3 32.4 1.0 CD2 A:HIS162 3.0 17.7 1.0 CE1 A:HIS162 3.0 20.7 1.0 HD2 A:HIS162 3.1 21.2 1.0 HE1 A:HIS162 3.2 24.7 1.0 OD1 A:ASP127 3.5 63.8 1.0 OD2 A:ASP127 3.5 43.4 1.0 CG A:ASP127 3.7 82.6 1.0 O A:HOH276 4.0 59.9 1.0 ND1 A:HIS162 4.1 16.6 1.0 CG A:HIS162 4.1 16.3 1.0 O A:HOH61 4.2 36.6 1.0 HB3 A:ASP127 4.8 57.4 1.0 CB A:ASP127 4.9 47.8 1.0 HD1 A:HIS162 4.9 19.8 1.0

Zinc binding site 3 out of 4 in the ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn3 b:17.8 occ:1.00 NE2 B:HIS134 2.0 14.5 1.0 NE2 B:HIS174 2.1 15.8 1.0 NE2 B:HIS196 2.1 17.5 1.0 O3 B:SO42 2.1 22.1 1.0 OD1 B:ASP130 2.8 20.2 1.0 CE1 B:HIS196 2.9 16.0 1.0 CE1 B:HIS174 3.0 18.9 1.0 CE1 B:HIS134 3.0 14.8 1.0 CD2 B:HIS134 3.0 16.3 1.0 HE1 B:HIS196 3.0 19.1 1.0 CD2 B:HIS174 3.1 16.9 1.0 HE1 B:HIS174 3.1 22.7 1.0 CD2 B:HIS196 3.2 16.7 1.0 HE1 B:HIS134 3.2 17.7 1.0 HD2 B:HIS134 3.2 19.5 1.0 S B:SO42 3.2 25.5 1.0 HD2 B:HIS174 3.3 20.2 1.0 O2 B:SO42 3.5 23.3 1.0 HD2 B:HIS196 3.5 19.9 1.0 O4 B:SO42 3.9 34.9 1.0 HH22 B:ARG86 3.9 20.4 1.0 CG B:ASP130 4.0 26.4 1.0 ND1 B:HIS174 4.1 20.2 1.0 ND1 B:HIS196 4.1 16.3 1.0 ND1 B:HIS134 4.1 16.4 1.0 CG B:HIS134 4.2 16.1 1.0 CG B:HIS174 4.2 17.1 1.0 HB3 B:SER170 4.3 21.7 1.0 CG B:HIS196 4.3 20.6 1.0 O1 B:SO42 4.5 30.5 1.0 HG21 B:VAL200 4.6 20.9 1.0 OD2 B:ASP130 4.6 32.6 1.0 HE1 B:PHE126 4.7 31.8 1.0 NH2 B:ARG86 4.7 17.1 1.0 HD23 B:LEU133 4.7 21.0 1.0 HA B:ASP130 4.7 20.8 1.0 HD23 B:LEU197 4.8 23.5 1.0 HD21 B:LEU197 4.8 23.5 1.0 HZ B:PHE126 4.8 34.6 1.0 HD1 B:HIS196 4.9 19.5 1.0 HD1 B:HIS174 4.9 24.2 1.0 HH21 B:ARG86 4.9 20.4 1.0 HD1 B:HIS134 4.9 19.6 1.0 HB2 B:ASP130 5.0 26.3 1.0

Zinc binding site 4 out of 4 in the ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn5 b:23.7 occ:1.00 O B:HOH271 2.1 38.3 1.0 NE2 B:HIS162 2.2 17.3 1.0 O B:HOH242 2.3 29.4 1.0 CD2 B:HIS162 3.2 16.2 1.0 CE1 B:HIS162 3.2 22.1 1.0 HD2 B:HIS162 3.3 19.4 1.0 HE1 B:HIS162 3.4 26.4 1.0 OD1 B:ASP127 3.7 40.9 1.0 OD2 B:ASP127 3.7 46.2 1.0 CG B:ASP127 3.8 79.8 1.0 ND1 B:HIS162 4.3 15.2 1.0 CG B:HIS162 4.3 15.4 1.0 O B:HOH62 4.4 30.6 1.0 HB3 B:ASP127 4.8 61.5 1.0 CB B:ASP127 4.9 51.3 1.0 O B:HOH273 5.0 30.6 1.0

G.P.Czelakowski, Z.S.Derewenda. ZN2+-Bound Fcd Domain of TM0439, A Putative Transcriptional Regulator To Be Published.